Search results for the GEO ID: GSE38668  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM947326 | GPL1261 |
|
Hcrt_ip1
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Trap'd Hypocretin neuron RNA, biological replicate 1
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tissue: Dissected diencephalon(Thalamus and Hypothalamus)
age: adult(6-12 weeks)
line: Hcrt JD218
strain: mixed Fvb and c57/bl6j
rna type: immunoprecipitate(IP)
Sex: both
number of mice: 5
|
Trap'd Hypocretin neuron RNA, biological replicate 1
|
| Sample_geo_accession | GSM947326
| | Sample_status | Public on Mar 22 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,D,Dougherty
| | Sample_contact_department | Genetics and Psychiatry
| | Sample_contact_institute | Washington University
| | Sample_contact_address | 4566 Scott Ave, box 8232
| | Sample_contact_city | St Louis
| | Sample_contact_state | Missouri
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947326/suppl/GSM947326_Hcrt_ip1.cel.gz
| | Sample_series_id | GSE38668
| | Sample_data_row_count | 45101
| | |
|
GSM947327 | GPL1261 |
|
Hcrt_ip2
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Trap'd Hypocretin neuron RNA, biological replicate 2
|
tissue: Dissected diencephalon(Thalamus and Hypothalamus)
age: adult(6-12 weeks)
line: Hcrt JD218
strain: mixed Fvb and c57/bl6j
rna type: immunoprecipitate(IP)
Sex: both
number of mice: 5
|
Trap'd Hypocretin neuron RNA, biological replicate 2
|
| Sample_geo_accession | GSM947327
| | Sample_status | Public on Mar 22 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,D,Dougherty
| | Sample_contact_department | Genetics and Psychiatry
| | Sample_contact_institute | Washington University
| | Sample_contact_address | 4566 Scott Ave, box 8232
| | Sample_contact_city | St Louis
| | Sample_contact_state | Missouri
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947327/suppl/GSM947327_Hcrt_ip2.cel.gz
| | Sample_series_id | GSE38668
| | Sample_data_row_count | 45101
| | |
|
GSM947328 | GPL1261 |
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Hcrt_ip3
|
Trap'd Hypocretin neuron RNA, biological replicate 3
|
tissue: Dissected diencephalon(Thalamus and Hypothalamus)
age: adult(6-12 weeks)
line: Hcrt JD218
strain: mixed Fvb and c57/bl6j
rna type: immunoprecipitate(IP)
Sex: both
number of mice: 5
|
Trap'd Hypocretin neuron RNA, biological replicate 3
|
| Sample_geo_accession | GSM947328
| | Sample_status | Public on Mar 22 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,D,Dougherty
| | Sample_contact_department | Genetics and Psychiatry
| | Sample_contact_institute | Washington University
| | Sample_contact_address | 4566 Scott Ave, box 8232
| | Sample_contact_city | St Louis
| | Sample_contact_state | Missouri
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947328/suppl/GSM947328_Hcrt_ip3.cel.gz
| | Sample_series_id | GSE38668
| | Sample_data_row_count | 45101
| | |
|
GSM947329 | GPL1261 |
|
Hcrt_ip4
|
Trap'd Hypocretin neuron RNA, biological replicate 4
|
tissue: Dissected diencephalon(Thalamus and Hypothalamus)
age: adult(6-12 weeks)
line: Hcrt JD218
strain: mixed Fvb and c57/bl6j
rna type: immunoprecipitate(IP)
Sex: both
number of mice: 5
|
Trap'd Hypocretin neuron RNA, biological replicate 4
|
| Sample_geo_accession | GSM947329
| | Sample_status | Public on Mar 22 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,D,Dougherty
| | Sample_contact_department | Genetics and Psychiatry
| | Sample_contact_institute | Washington University
| | Sample_contact_address | 4566 Scott Ave, box 8232
| | Sample_contact_city | St Louis
| | Sample_contact_state | Missouri
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947329/suppl/GSM947329_Hcrt_ip4.cel.gz
| | Sample_series_id | GSE38668
| | Sample_data_row_count | 45101
| | |
|
GSM947330 | GPL1261 |
|
Hcrt_ub1
|
Total tissue RNA (unbound) from Replicate 1
|
tissue: Dissected diencephalon(Thalamus and Hypothalamus)
age: adult(6-12 weeks)
line: Hcrt JD218
strain: mixed Fvb and c57/bl6j
rna type: unbound(total)
Sex: both
number of mice: 5
|
Total tissue RNA (unbound) from Replicate 1
|
| Sample_geo_accession | GSM947330
| | Sample_status | Public on Mar 22 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,D,Dougherty
| | Sample_contact_department | Genetics and Psychiatry
| | Sample_contact_institute | Washington University
| | Sample_contact_address | 4566 Scott Ave, box 8232
| | Sample_contact_city | St Louis
| | Sample_contact_state | Missouri
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947330/suppl/GSM947330_Hcrt_ub1.cel.gz
| | Sample_series_id | GSE38668
| | Sample_data_row_count | 45101
| | |
|
GSM947331 | GPL1261 |
|
Hcrt_ub2
|
Total tissue RNA (unbound) from Replicate 2
|
tissue: Dissected diencephalon(Thalamus and Hypothalamus)
age: adult(6-12 weeks)
line: Hcrt JD218
strain: mixed Fvb and c57/bl6j
rna type: unbound(total)
Sex: both
number of mice: 5
|
Total tissue RNA (unbound) from Replicate 2
|
| Sample_geo_accession | GSM947331
| | Sample_status | Public on Mar 22 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,D,Dougherty
| | Sample_contact_department | Genetics and Psychiatry
| | Sample_contact_institute | Washington University
| | Sample_contact_address | 4566 Scott Ave, box 8232
| | Sample_contact_city | St Louis
| | Sample_contact_state | Missouri
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947331/suppl/GSM947331_Hcrt_ub2.cel.gz
| | Sample_series_id | GSE38668
| | Sample_data_row_count | 45101
| | |
|
GSM947332 | GPL1261 |
|
Hcrt_ub3
|
Total tissue RNA (unbound) from Replicate 3
|
tissue: Dissected diencephalon(Thalamus and Hypothalamus)
age: adult(6-12 weeks)
line: Hcrt JD218
strain: mixed Fvb and c57/bl6j
rna type: unbound(total)
Sex: both
number of mice: 5
|
Total tissue RNA (unbound) from Replicate 3
|
| Sample_geo_accession | GSM947332
| | Sample_status | Public on Mar 22 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,D,Dougherty
| | Sample_contact_department | Genetics and Psychiatry
| | Sample_contact_institute | Washington University
| | Sample_contact_address | 4566 Scott Ave, box 8232
| | Sample_contact_city | St Louis
| | Sample_contact_state | Missouri
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947332/suppl/GSM947332_Hcrt_ub3.cel.gz
| | Sample_series_id | GSE38668
| | Sample_data_row_count | 45101
| | |
|
GSM947333 | GPL1261 |
|
Hcrt_ub4
|
Total tissue RNA (unbound) from Replicate 4
|
tissue: Dissected diencephalon(Thalamus and Hypothalamus)
age: adult(6-12 weeks)
line: Hcrt JD218
strain: mixed Fvb and c57/bl6j
rna type: unbound(total)
Sex: both
number of mice: 5
|
Total tissue RNA (unbound) from Replicate 4
|
| Sample_geo_accession | GSM947333
| | Sample_status | Public on Mar 22 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 23 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| | Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,D,Dougherty
| | Sample_contact_department | Genetics and Psychiatry
| | Sample_contact_institute | Washington University
| | Sample_contact_address | 4566 Scott Ave, box 8232
| | Sample_contact_city | St Louis
| | Sample_contact_state | Missouri
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947333/suppl/GSM947333_Hcrt_ub4.cel.gz
| | Sample_series_id | GSE38668
| | Sample_data_row_count | 45101
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