Search results for the GEO ID: GSE38693  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM947609 | GPL1261 |
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CTRL.cut.R1
|
WT mouse, Schwann cell, cut
|
tissue: Adult schwann cell
treatment: cut
genotype: WT
|
Gene expression data from cut schwannoma cells from adult WT mice, 7 days after nerve cutting.
|
| Sample_geo_accession | GSM947609
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The sciatic nerve of adult mice was cut at the sciatic notch. 7 days after injury, the distal stump and contralateral control nerve were excised and processed as indicated in the extract protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the RiboPure™ Kit from Ambion according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Labelled cDNA Microarray hybridisations were performed on Affymetrix Mouse Genome 430 2.0 arrays.
| | Sample_scan_protocol | PICR scanner 3000
| | Sample_data_processing | Data were processed using R/Bioconductor. The RMA (Robust Multichip Average) expression measure was calculated for each probe set using the Affy package's “rma” function with default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kristjan ,R.,Jessen
| | Sample_contact_email | k.jessen@ucl.ac.uk
| | Sample_contact_phone | 44 2076793351
| | Sample_contact_institute | University College London
| | Sample_contact_address | Gower Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1E6BT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947609/suppl/GSM947609_0908_AB_5_3_M_schwann_CTRL_cut_r1.CEL.gz
| | Sample_series_id | GSE38693
| | Sample_data_row_count | 45101
| | |
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GSM947610 | GPL1261 |
|
CTRL.cut.R2
|
WT mouse, Schwann cell, cut
|
tissue: Adult schwann cell
treatment: cut
genotype: WT
|
Gene expression data from cut schwannoma cells from adult WT mice, 7 days after nerve cutting.
|
| Sample_geo_accession | GSM947610
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The sciatic nerve of adult mice was cut at the sciatic notch. 7 days after injury, the distal stump and contralateral control nerve were excised and processed as indicated in the extract protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the RiboPure™ Kit from Ambion according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Labelled cDNA Microarray hybridisations were performed on Affymetrix Mouse Genome 430 2.0 arrays.
| | Sample_scan_protocol | PICR scanner 3000
| | Sample_data_processing | Data were processed using R/Bioconductor. The RMA (Robust Multichip Average) expression measure was calculated for each probe set using the Affy package's “rma” function with default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kristjan ,R.,Jessen
| | Sample_contact_email | k.jessen@ucl.ac.uk
| | Sample_contact_phone | 44 2076793351
| | Sample_contact_institute | University College London
| | Sample_contact_address | Gower Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1E6BT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947610/suppl/GSM947610_0908_AB_5_7_M_schwann_CTRL_cut_r2.CEL.gz
| | Sample_series_id | GSE38693
| | Sample_data_row_count | 45101
| | |
|
GSM947611 | GPL1261 |
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CTRL.uncut.R1
|
WT mouse, Schwann cell, uncut
|
tissue: Adult schwann cell
treatment: uncut
genotype: WT
|
Gene expression data from uncut schwannoma cells from adult WT mice.
|
| Sample_geo_accession | GSM947611
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The sciatic nerve of adult mice was cut at the sciatic notch. 7 days after injury, the distal stump and contralateral control nerve were excised and processed as indicated in the extract protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the RiboPure™ Kit from Ambion according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Labelled cDNA Microarray hybridisations were performed on Affymetrix Mouse Genome 430 2.0 arrays.
| | Sample_scan_protocol | PICR scanner 3000
| | Sample_data_processing | Data were processed using R/Bioconductor. The RMA (Robust Multichip Average) expression measure was calculated for each probe set using the Affy package's “rma” function with default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kristjan ,R.,Jessen
| | Sample_contact_email | k.jessen@ucl.ac.uk
| | Sample_contact_phone | 44 2076793351
| | Sample_contact_institute | University College London
| | Sample_contact_address | Gower Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1E6BT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947611/suppl/GSM947611_0908_AB_5_4_M_schwann_CTRL_uncut_r1.CEL.gz
| | Sample_series_id | GSE38693
| | Sample_data_row_count | 45101
| | |
|
GSM947612 | GPL1261 |
|
CTRL.uncut.R2
|
WT mouse, Schwann cell, uncut
|
tissue: Adult schwann cell
treatment: uncut
genotype: WT
|
Gene expression data from uncut schwannoma cells from adult WT mice.
|
| Sample_geo_accession | GSM947612
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The sciatic nerve of adult mice was cut at the sciatic notch. 7 days after injury, the distal stump and contralateral control nerve were excised and processed as indicated in the extract protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the RiboPure™ Kit from Ambion according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Labelled cDNA Microarray hybridisations were performed on Affymetrix Mouse Genome 430 2.0 arrays.
| | Sample_scan_protocol | PICR scanner 3000
| | Sample_data_processing | Data were processed using R/Bioconductor. The RMA (Robust Multichip Average) expression measure was calculated for each probe set using the Affy package's “rma” function with default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kristjan ,R.,Jessen
| | Sample_contact_email | k.jessen@ucl.ac.uk
| | Sample_contact_phone | 44 2076793351
| | Sample_contact_institute | University College London
| | Sample_contact_address | Gower Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1E6BT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947612/suppl/GSM947612_0908_AB_5_8_M_schwann_CTRL_uncut_r2.CEL.gz
| | Sample_series_id | GSE38693
| | Sample_data_row_count | 45101
| | |
|
GSM947613 | GPL1261 |
|
KO.cut.R1
|
c-Jun KO mouse, Schwann cell, cut
|
tissue: Adult schwann cell
treatment: cut
genotype: c-Jun KO
|
Gene expression data from cut schwannoma cells from adult c-Jun KO mice, 7 days after nerve cutting.
|
| Sample_geo_accession | GSM947613
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The sciatic nerve of adult mice was cut at the sciatic notch. 7 days after injury, the distal stump and contralateral control nerve were excised and processed as indicated in the extract protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the RiboPure™ Kit from Ambion according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Labelled cDNA Microarray hybridisations were performed on Affymetrix Mouse Genome 430 2.0 arrays.
| | Sample_scan_protocol | PICR scanner 3000
| | Sample_data_processing | Data were processed using R/Bioconductor. The RMA (Robust Multichip Average) expression measure was calculated for each probe set using the Affy package's “rma” function with default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kristjan ,R.,Jessen
| | Sample_contact_email | k.jessen@ucl.ac.uk
| | Sample_contact_phone | 44 2076793351
| | Sample_contact_institute | University College London
| | Sample_contact_address | Gower Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1E6BT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947613/suppl/GSM947613_0908_AB_5_1_M_schwann_KO_cut_r1.CEL.gz
| | Sample_series_id | GSE38693
| | Sample_data_row_count | 45101
| | |
|
GSM947614 | GPL1261 |
|
KO.cut.R2
|
c-Jun KO mouse, Schwann cell, cut
|
tissue: Adult schwann cell
treatment: cut
genotype: c-Jun KO
|
Gene expression data from cut schwannoma cells from adult c-Jun KO mice, 7 days after nerve cutting.
|
| Sample_geo_accession | GSM947614
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The sciatic nerve of adult mice was cut at the sciatic notch. 7 days after injury, the distal stump and contralateral control nerve were excised and processed as indicated in the extract protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the RiboPure™ Kit from Ambion according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Labelled cDNA Microarray hybridisations were performed on Affymetrix Mouse Genome 430 2.0 arrays.
| | Sample_scan_protocol | PICR scanner 3000
| | Sample_data_processing | Data were processed using R/Bioconductor. The RMA (Robust Multichip Average) expression measure was calculated for each probe set using the Affy package's “rma” function with default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kristjan ,R.,Jessen
| | Sample_contact_email | k.jessen@ucl.ac.uk
| | Sample_contact_phone | 44 2076793351
| | Sample_contact_institute | University College London
| | Sample_contact_address | Gower Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1E6BT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947614/suppl/GSM947614_0908_AB_5_5_M_schwann_KO_cut_r2.CEL.gz
| | Sample_series_id | GSE38693
| | Sample_data_row_count | 45101
| | |
|
GSM947615 | GPL1261 |
|
KO.uncut.R1
|
c-Jun KO mouse, Schwann cell, uncut
|
tissue: Adult schwann cell
treatment: uncut
genotype: c-Jun KO
|
Gene expression data from uncut schwannoma cells from adult c-Jun KO mice.
|
| Sample_geo_accession | GSM947615
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The sciatic nerve of adult mice was cut at the sciatic notch. 7 days after injury, the distal stump and contralateral control nerve were excised and processed as indicated in the extract protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the RiboPure™ Kit from Ambion according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Labelled cDNA Microarray hybridisations were performed on Affymetrix Mouse Genome 430 2.0 arrays.
| | Sample_scan_protocol | PICR scanner 3000
| | Sample_data_processing | Data were processed using R/Bioconductor. The RMA (Robust Multichip Average) expression measure was calculated for each probe set using the Affy package's “rma” function with default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kristjan ,R.,Jessen
| | Sample_contact_email | k.jessen@ucl.ac.uk
| | Sample_contact_phone | 44 2076793351
| | Sample_contact_institute | University College London
| | Sample_contact_address | Gower Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1E6BT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947615/suppl/GSM947615_0908_AB_5_2_M_schwann_KO_uncut_r1.CEL.gz
| | Sample_series_id | GSE38693
| | Sample_data_row_count | 45101
| | |
|
GSM947616 | GPL1261 |
|
KO.uncut.R2
|
c-Jun KO mouse, Schwann cell, uncut
|
tissue: Adult schwann cell
treatment: uncut
genotype: c-Jun KO
|
Gene expression data from uncut schwannoma cells from adult c-Jun KO mice.
|
| Sample_geo_accession | GSM947616
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The sciatic nerve of adult mice was cut at the sciatic notch. 7 days after injury, the distal stump and contralateral control nerve were excised and processed as indicated in the extract protocol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the RiboPure™ Kit from Ambion according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Labelled cDNA Microarray hybridisations were performed on Affymetrix Mouse Genome 430 2.0 arrays.
| | Sample_scan_protocol | PICR scanner 3000
| | Sample_data_processing | Data were processed using R/Bioconductor. The RMA (Robust Multichip Average) expression measure was calculated for each probe set using the Affy package's “rma” function with default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kristjan ,R.,Jessen
| | Sample_contact_email | k.jessen@ucl.ac.uk
| | Sample_contact_phone | 44 2076793351
| | Sample_contact_institute | University College London
| | Sample_contact_address | Gower Street
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | WC1E6BT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947616/suppl/GSM947616_0908_AB_5_6_M_schwann_KO_uncut_r2.CEL.gz
| | Sample_series_id | GSE38693
| | Sample_data_row_count | 45101
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