Search results for the GEO ID: GSE38696  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM947657 | GPL1261 |
|
Mouse light zone, biological replicate 1
|
Mouse lymph node light zone cells
|
strain: C57BL/6
tissue: lymph node
cell type: Germinal center B cells (B220+CD38-CD95+)
cell subpopulation: light zone (CXCR4hi/CD83lo)
|
MOUSE_LZ1
|
| Sample_geo_accession | GSM947657
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were immunized subcutaneously with NP-KLH in alum and lymph nodes were harvested 12 days after immunization.
| | Sample_growth_protocol_ch1 | Germinal center cells were isolated from immunized mouse lymph nodes.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the Affymetrix 3'IVT Express Kit.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse MOE430.2 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned on Affymetrix GeneChip Scanner 3000 7G using Command Console Software
| | Sample_data_processing | The data were RMA-normalized using Gene Pattern Expression File Creator Software (v.7.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Gabriel,D,Victora
| | Sample_contact_email | victora@wi.mit.edu
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947657/suppl/GSM947657_MMLZ_1.CEL.gz
| | Sample_series_id | GSE38696
| | Sample_series_id | GSE38712
| | Sample_data_row_count | 45037
| | |
|
GSM947658 | GPL1261 |
|
Mouse light zone, biological replicate 2
|
Mouse lymph node light zone cells
|
strain: C57BL/6
tissue: lymph node
cell type: Germinal center B cells (B220+CD38-CD95+)
cell subpopulation: light zone (CXCR4hi/CD83lo)
|
MOUSE_LZ2
|
| Sample_geo_accession | GSM947658
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were immunized subcutaneously with NP-KLH in alum and lymph nodes were harvested 12 days after immunization.
| | Sample_growth_protocol_ch1 | Germinal center cells were isolated from immunized mouse lymph nodes.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the Affymetrix 3'IVT Express Kit.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse MOE430.2 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned on Affymetrix GeneChip Scanner 3000 7G using Command Console Software
| | Sample_data_processing | The data were RMA-normalized using Gene Pattern Expression File Creator Software (v.7.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Gabriel,D,Victora
| | Sample_contact_email | victora@wi.mit.edu
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947658/suppl/GSM947658_MMLZ_2.CEL.gz
| | Sample_series_id | GSE38696
| | Sample_series_id | GSE38712
| | Sample_data_row_count | 45037
| | |
|
GSM947659 | GPL1261 |
|
Mouse light zone, biological replicate 3
|
Mouse lymph node light zone cells
|
strain: C57BL/6
tissue: lymph node
cell type: Germinal center B cells (B220+CD38-CD95+)
cell subpopulation: light zone (CXCR4hi/CD83lo)
|
MOUSE_LZ3
|
| Sample_geo_accession | GSM947659
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were immunized subcutaneously with NP-KLH in alum and lymph nodes were harvested 12 days after immunization.
| | Sample_growth_protocol_ch1 | Germinal center cells were isolated from immunized mouse lymph nodes.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the Affymetrix 3'IVT Express Kit.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse MOE430.2 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned on Affymetrix GeneChip Scanner 3000 7G using Command Console Software
| | Sample_data_processing | The data were RMA-normalized using Gene Pattern Expression File Creator Software (v.7.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Gabriel,D,Victora
| | Sample_contact_email | victora@wi.mit.edu
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947659/suppl/GSM947659_MMLZ_3.CEL.gz
| | Sample_series_id | GSE38696
| | Sample_series_id | GSE38712
| | Sample_data_row_count | 45037
| | |
|
GSM947660 | GPL1261 |
|
Mouse light zone, biological replicate 4
|
Mouse lymph node light zone cells
|
strain: C57BL/6
tissue: lymph node
cell type: Germinal center B cells (B220+CD38-CD95+)
cell subpopulation: light zone (CXCR4hi/CD83lo)
|
MOUSE_LZ4
|
| Sample_geo_accession | GSM947660
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were immunized subcutaneously with NP-KLH in alum and lymph nodes were harvested 12 days after immunization.
| | Sample_growth_protocol_ch1 | Germinal center cells were isolated from immunized mouse lymph nodes.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the Affymetrix 3'IVT Express Kit.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse MOE430.2 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned on Affymetrix GeneChip Scanner 3000 7G using Command Console Software
| | Sample_data_processing | The data were RMA-normalized using Gene Pattern Expression File Creator Software (v.7.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Gabriel,D,Victora
| | Sample_contact_email | victora@wi.mit.edu
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947660/suppl/GSM947660_MMLZ_4.CEL.gz
| | Sample_series_id | GSE38696
| | Sample_series_id | GSE38712
| | Sample_data_row_count | 45037
| | |
|
GSM947661 | GPL1261 |
|
Mouse dark zone, biological replicate 1
|
Mouse lymph node dark zone cells
|
strain: C57BL/6
tissue: lymph node
cell type: Germinal center B cells (B220+CD38-CD95+)
cell subpopulation: dark zone (CXCR4lo/CD83hi)
|
MOUSE_DZ1
|
| Sample_geo_accession | GSM947661
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were immunized subcutaneously with NP-KLH in alum and lymph nodes were harvested 12 days after immunization.
| | Sample_growth_protocol_ch1 | Germinal center cells were isolated from immunized mouse lymph nodes.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the Affymetrix 3'IVT Express Kit.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse MOE430.2 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned on Affymetrix GeneChip Scanner 3000 7G using Command Console Software
| | Sample_data_processing | The data were RMA-normalized using Gene Pattern Expression File Creator Software (v.7.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Gabriel,D,Victora
| | Sample_contact_email | victora@wi.mit.edu
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947661/suppl/GSM947661_MMDZ_1.CEL.gz
| | Sample_series_id | GSE38696
| | Sample_series_id | GSE38712
| | Sample_data_row_count | 45037
| | |
|
GSM947662 | GPL1261 |
|
Mouse dark zone, biological replicate 2
|
Mouse lymph node dark zone cells
|
strain: C57BL/6
tissue: lymph node
cell type: Germinal center B cells (B220+CD38-CD95+)
cell subpopulation: dark zone (CXCR4lo/CD83hi)
|
MOUSE_DZ2
|
| Sample_geo_accession | GSM947662
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were immunized subcutaneously with NP-KLH in alum and lymph nodes were harvested 12 days after immunization.
| | Sample_growth_protocol_ch1 | Germinal center cells were isolated from immunized mouse lymph nodes.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the Affymetrix 3'IVT Express Kit.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse MOE430.2 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned on Affymetrix GeneChip Scanner 3000 7G using Command Console Software
| | Sample_data_processing | The data were RMA-normalized using Gene Pattern Expression File Creator Software (v.7.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Gabriel,D,Victora
| | Sample_contact_email | victora@wi.mit.edu
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947662/suppl/GSM947662_MMDZ_2.CEL.gz
| | Sample_series_id | GSE38696
| | Sample_series_id | GSE38712
| | Sample_data_row_count | 45037
| | |
|
GSM947663 | GPL1261 |
|
Mouse dark zone, biological replicate 3
|
Mouse lymph node dark zone cells
|
strain: C57BL/6
tissue: lymph node
cell type: Germinal center B cells (B220+CD38-CD95+)
cell subpopulation: dark zone (CXCR4lo/CD83hi)
|
MOUSE_DZ3
|
| Sample_geo_accession | GSM947663
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were immunized subcutaneously with NP-KLH in alum and lymph nodes were harvested 12 days after immunization.
| | Sample_growth_protocol_ch1 | Germinal center cells were isolated from immunized mouse lymph nodes.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the Affymetrix 3'IVT Express Kit.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse MOE430.2 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned on Affymetrix GeneChip Scanner 3000 7G using Command Console Software
| | Sample_data_processing | The data were RMA-normalized using Gene Pattern Expression File Creator Software (v.7.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Gabriel,D,Victora
| | Sample_contact_email | victora@wi.mit.edu
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947663/suppl/GSM947663_MMDZ_3.CEL.gz
| | Sample_series_id | GSE38696
| | Sample_series_id | GSE38712
| | Sample_data_row_count | 45037
| | |
|
GSM947664 | GPL1261 |
|
Mouse dark zone, biological replicate 4
|
Mouse lymph node dark zone cells
|
strain: C57BL/6
tissue: lymph node
cell type: Germinal center B cells (B220+CD38-CD95+)
cell subpopulation: dark zone (CXCR4lo/CD83hi)
|
MOUSE_DZ4
|
| Sample_geo_accession | GSM947664
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 13 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were immunized subcutaneously with NP-KLH in alum and lymph nodes were harvested 12 days after immunization.
| | Sample_growth_protocol_ch1 | Germinal center cells were isolated from immunized mouse lymph nodes.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using the Affymetrix 3'IVT Express Kit.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix Mouse MOE430.2 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned on Affymetrix GeneChip Scanner 3000 7G using Command Console Software
| | Sample_data_processing | The data were RMA-normalized using Gene Pattern Expression File Creator Software (v.7.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Gabriel,D,Victora
| | Sample_contact_email | victora@wi.mit.edu
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02142
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947664/suppl/GSM947664_MMDZ_4.CEL.gz
| | Sample_series_id | GSE38696
| | Sample_series_id | GSE38712
| | Sample_data_row_count | 45037
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
