Search results for the GEO ID: GSE38713 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM948550 | GPL570 |
|
b72
|
Human colon biopsies from non-inflammatory control
|
gender: male
age (years): 20
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948550
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948550/suppl/GSM948550_b72.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948551 | GPL570 |
|
b76
|
Human colon biopsies from non-inflammatory control
|
gender: male
age (years): 30
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948551
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948551/suppl/GSM948551_b76bis.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948552 | GPL570 |
|
b89
|
Human colon biopsies from non-inflammatory control
|
gender: male
age (years): 41
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948552
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948552/suppl/GSM948552_b89.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948553 | GPL570 |
|
b93
|
Human colon biopsies from non-inflammatory control
|
gender: female
age (years): 45
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948553
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948553/suppl/GSM948553_b93.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948554 | GPL570 |
|
b105
|
Human colon biopsies from non-inflammatory control
|
gender: female
age (years): 60
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948554
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948554/suppl/GSM948554_B105.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948555 | GPL570 |
|
b106
|
Human colon biopsies from non-inflammatory control
|
gender: female
age (years): 55
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948555
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948555/suppl/GSM948555_B106.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948556 | GPL570 |
|
b138
|
Human colon biopsies from non-inflammatory control
|
gender: female
age (years): 36
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948556
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948556/suppl/GSM948556_b138.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948557 | GPL570 |
|
b143
|
Human colon biopsies from non-inflammatory control
|
gender: female
age (years): 54
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948557
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948557/suppl/GSM948557_B143.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948558 | GPL570 |
|
b146
|
Human colon biopsies from non-inflammatory control
|
gender: female
age (years): 22
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948558
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948558/suppl/GSM948558_B146.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948559 | GPL570 |
|
b147
|
Human colon biopsies from non-inflammatory control
|
gender: female
age (years): 38
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948559
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948559/suppl/GSM948559_B147.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948560 | GPL570 |
|
b148
|
Human colon biopsies from non-inflammatory control
|
gender: male
age (years): 50
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948560
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948560/suppl/GSM948560_B148.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948561 | GPL570 |
|
b156
|
Human colon biopsies from non-inflammatory control
|
gender: male
age (years): 40
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948561
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948561/suppl/GSM948561_b156.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948562 | GPL570 |
|
b158
|
Human colon biopsies from non-inflammatory control
|
gender: female
age (years): 50
evolution time (years): --
disease extension: --
treatment: --
|
Gene expression data from human colon biopsies; non-inflammatory control
|
Sample_geo_accession | GSM948562
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948562/suppl/GSM948562_b158.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948563 | GPL570 |
|
b2.2
|
Human colon biopsies from UC patient in remission (involved mucosa)
|
gender: female
age (years): 40
evolution time (years): 13
disease extension: Left-sided colitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; UC patient in remission
|
Sample_geo_accession | GSM948563
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948563/suppl/GSM948563_2_1.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948564 | GPL570 |
|
b6.2
|
Human colon biopsies from UC patient in remission (involved mucosa)
|
gender: male
age (years): 50
evolution time (years): 6
disease extension: Pancolitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; UC patient in remission
|
Sample_geo_accession | GSM948564
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948564/suppl/GSM948564_6_1.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948565 | GPL570 |
|
b7.2
|
Human colon biopsies from UC patient in remission (involved mucosa)
|
gender: female
age (years): 60
evolution time (years): 22
disease extension: Left-sided colitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; UC patient in remission
|
Sample_geo_accession | GSM948565
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948565/suppl/GSM948565_7_1.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948566 | GPL570 |
|
b8.2
|
Human colon biopsies from UC patient in remission (involved mucosa)
|
gender: male
age (years): 53
evolution time (years): 8
disease extension: Left-sided colitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; UC patient in remission
|
Sample_geo_accession | GSM948566
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948566/suppl/GSM948566_8_1.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948567 | GPL570 |
|
b9.2
|
Human colon biopsies from UC patient in remission (involved mucosa)
|
gender: female
age (years): 63
evolution time (years): 10
disease extension: Left-sided colitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; UC patient in remission
|
Sample_geo_accession | GSM948567
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948567/suppl/GSM948567_9_1.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948568 | GPL570 |
|
b10.2
|
Human colon biopsies from UC patient in remission (involved mucosa)
|
gender: male
age (years): 33
evolution time (years): 8
disease extension: Left-sided colitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; UC patient in remission
|
Sample_geo_accession | GSM948568
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948568/suppl/GSM948568_10_1.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948569 | GPL570 |
|
b12.2
|
Human colon biopsies from UC patient in remission (involved mucosa)
|
gender: female
age (years): 36
evolution time (years): 3
disease extension: Left-sided colitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; UC patient in remission
|
Sample_geo_accession | GSM948569
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948569/suppl/GSM948569_12_1.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948570 | GPL570 |
|
b23.2
|
Human colon biopsies from UC patient in remission (involved mucosa)
|
gender: female
age (years): 60
evolution time (years): 29
disease extension: Pancolitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; UC patient in remission
|
Sample_geo_accession | GSM948570
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948570/suppl/GSM948570_23_1.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948571 | GPL570 |
|
b36+
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 40
evolution time (years): 13
disease extension: Left-sided colitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948571
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948571/suppl/GSM948571_36+.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948572 | GPL570 |
|
b36-
|
Human colon biopsies from UC patient with active disease (non-involved mucosa)
|
gender: female
age (years): 40
evolution time (years): 13
disease extension: Left-sided colitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; non-involved area UC active patient
|
Sample_geo_accession | GSM948572
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948572/suppl/GSM948572_36-bis.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948573 | GPL570 |
|
b38+
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: male
age (years): 34
evolution time (years): 7
disease extension: Left-sided colitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948573
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948573/suppl/GSM948573_38+.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948574 | GPL570 |
|
b38-
|
Human colon biopsies from UC patient with active disease (non-involved mucosa)
|
gender: male
age (years): 34
evolution time (years): 7
disease extension: Left-sided colitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; non-involved area UC active patient
|
Sample_geo_accession | GSM948574
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948574/suppl/GSM948574_38-.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948575 | GPL570 |
|
b44+
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: male
age (years): 39
evolution time (years): 3
disease extension: Left-sided colitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948575
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948575/suppl/GSM948575_44+.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948576 | GPL570 |
|
b44-
|
Human colon biopsies from UC patient with active disease (non-involved mucosa)
|
gender: male
age (years): 39
evolution time (years): 3
disease extension: Left-sided colitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; non-involved area UC active patient
|
Sample_geo_accession | GSM948576
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948576/suppl/GSM948576_44-bis.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948577 | GPL570 |
|
b45+
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 41
evolution time (years): 7
disease extension: Left-sided colitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948577
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948577/suppl/GSM948577_b45--.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948578 | GPL570 |
|
b45-
|
Human colon biopsies from UC patient with active disease (non-involved mucosa)
|
gender: female
age (years): 41
evolution time (years): 7
disease extension: Left-sided colitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; non-involved area UC active patient
|
Sample_geo_accession | GSM948578
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948578/suppl/GSM948578_45+.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948579 | GPL570 |
|
b66+
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 47
evolution time (years): 1
disease extension: Left-sided colitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948579
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948579/suppl/GSM948579_66+.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948580 | GPL570 |
|
X66-
|
Human colon biopsies from UC patient with active disease (non-involved mucosa)
|
gender: female
age (years): 47
evolution time (years): 1
disease extension: Left-sided colitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; non-involved area UC active patient
|
Sample_geo_accession | GSM948580
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948580/suppl/GSM948580_66-.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948581 | GPL570 |
|
b78+
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 34
evolution time (years): 13
disease extension: Pancolitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948581
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948581/suppl/GSM948581_b78+.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948583 | GPL570 |
|
b86+
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 43
evolution time (years): 7
disease extension: Pancolitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948583
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948583/suppl/GSM948583_86+.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948584 | GPL570 |
|
b86-
|
Human colon biopsies from UC patient with active disease (non-involved mucosa)
|
gender: female
age (years): 43
evolution time (years): 7
disease extension: Pancolitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; non-involved area UC active patient
|
Sample_geo_accession | GSM948584
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948584/suppl/GSM948584_86-.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948585 | GPL570 |
|
B137+
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: male
age (years): 58
evolution time (years): 10
disease extension: Left-sided colitis
treatment: No treatment
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948585
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948585/suppl/GSM948585_B137+.CEL.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948586 | GPL570 |
|
r04
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 36
evolution time (years): 0
disease extension: Left-sided colitis
treatment: No treatment
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948586
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948586/suppl/GSM948586_r04.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948587 | GPL570 |
|
r07
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 30
evolution time (years): 3
disease extension: Pancolitis
treatment: Systemic steroids
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948587
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948587/suppl/GSM948587_r07.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948588 | GPL570 |
|
r13
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 41
evolution time (years): 15
disease extension: Pancolitis
treatment: 5-ASA
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948588
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948588/suppl/GSM948588_r13.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948589 | GPL570 |
|
r18
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 34
evolution time (years): 14
disease extension: Pancolitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948589
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948589/suppl/GSM948589_r18.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948590 | GPL570 |
|
r19
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: female
age (years): 62
evolution time (years): 4
disease extension: Pancolitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948590
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948590/suppl/GSM948590_r19.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
| |
|
GSM948591 | GPL570 |
|
r22
|
Human colon biopsies from UC patient with active disease (involved mucosa)
|
gender: male
age (years): 51
evolution time (years): 2
disease extension: Pancolitis
treatment: Azathioprine
|
Gene expression data from human colon biopsies; involved area UC active patient
|
Sample_geo_accession | GSM948591
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948591/suppl/GSM948591_r22.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
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GSM948592 | GPL570 |
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r24
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Human colon biopsies from UC patient with active disease (involved mucosa)
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gender: female
age (years): 46
evolution time (years): 0
disease extension: Left-sided colitis
treatment: Azathioprine
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Gene expression data from human colon biopsies; involved area UC active patient
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Sample_geo_accession | GSM948592
| Sample_status | Public on Nov 09 2012
| Sample_submission_date | Jun 14 2012
| Sample_last_update_date | Nov 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix protocol using a Gene chip scanner 3000
| Sample_data_processing | The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
| Sample_platform_id | GPL570
| Sample_contact_name | Azucena,,Salas
| Sample_contact_email | asalas1@clinic.ub.es
| Sample_contact_department | Gastroenterology
| Sample_contact_institute | IDIBAPS
| Sample_contact_address | Rosselló, 149-153
| Sample_contact_city | Barcelona
| Sample_contact_zip/postal_code | 08036
| Sample_contact_country | Spain
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM948nnn/GSM948592/suppl/GSM948592_r24.cel.gz
| Sample_series_id | GSE38713
| Sample_data_row_count | 54675
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