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Process data
Search results for the GEO ID: GSE38720
(Click on the check boxes provided under "Select for analysis", to initiate grouping)
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group.
Scroll down
)
GSM ID
GPL ID
Select for analysis
Title
Source name
Description
Characteristics
GSM948651
GPL571
Huh7/5-2 uninfected 4 h biological replicate 1
Huh7/5-2 uninfected 4h
cell type: Huh7/5-2 time point: 4h hcv infection: false
GSM948652
GPL571
Huh7/5-2 uninfected 4 h biological replicate 2
Huh7/5-2 uninfected 4h
cell type: Huh7/5-2 time point: 4h hcv infection: false
GSM948653
GPL571
Huh7/5-2 infected 4 h biological replicate 1
Huh7/5-2 HCV infected 4h
cell type: Huh7/5-2 time point: 4h hcv infection: true
GSM948654
GPL571
Huh7/5-2 infected 4 h biological replicate 2
Huh7/5-2 HCV infected 4h
cell type: Huh7/5-2 time point: 4h hcv infection: true
GSM948655
GPL571
Huh7/5-2 infected 12 h biological replicate 1
Huh7/5-2 HCV infected 12h
cell type: Huh7/5-2 time point: 12h hcv infection: true
GSM948656
GPL571
Huh7/5-2 infected 12 h biological replicate 2
Huh7/5-2 HCV infected 12h
cell type: Huh7/5-2 time point: 12h hcv infection: true
GSM948657
GPL571
Huh7/5-2 infected 24 h biological replicate 1
Huh7/5-2 HCV infected 24h
cell type: Huh7/5-2 time point: 24h hcv infection: true
GSM948658
GPL571
Huh7/5-2 infected 24 h biological replicate 2
Huh7/5-2 HCV infected 24h
cell type: Huh7/5-2 time point: 24h hcv infection: true
GSM948659
GPL571
Huh7/5-2 uninfected 48 h biological replicate 1
Huh7/5-2 uninfected 48h
cell type: Huh7/5-2 time point: 48h hcv infection: false
GSM948660
GPL571
Huh7/5-2 uninfected 48 h biological replicate 2
Huh7/5-2 uninfected 48h
cell type: Huh7/5-2 time point: 48h hcv infection: false
GSM948661
GPL571
Huh7/5-2 infected 48 h biological replicate 1
Huh7/5-2 HCV infected 48h
cell type: Huh7/5-2 time point: 48h hcv infection: true
GSM948662
GPL571
Huh7/5-2 infected 48 h biological replicate 2
Huh7/5-2 HCV infected 48h
cell type: Huh7/5-2 time point: 48h hcv infection: true
GSM948663
GPL571
Huh7/5-2 infected 72 h biological replicate 1
Huh7/5-2 HCV infected 72h
cell type: Huh7/5-2 time point: 72h hcv infection: true
GSM948664
GPL571
Huh7/5-2 infected 72 h biological replicate 2
Huh7/5-2 HCV infected 72h
cell type: Huh7/5-2 time point: 72h hcv infection: true
Make groups for comparisons
(2 groups will be compared at a time)
Select GSMs and click on "Add groups"
Enter the group name here:
Select expression type
Transcripts profile based on;
A. Differential status (Up/Down regulation)
Regulation type
Up
Down
Up/Down
Fold change
2
4
6
8
10
p-value
0.05
0.01
0.001
0.0001
0.00001
B. Absolute calls (Transcribed/Not-detected)
Derive calls within/across groups
Within groups
Detection status
Transcribed
Not-detected
Both
Percentage detection
10
20
30
40
50
60
70
80
90
100
Across groups
Detection status
First group:
Transcribed
Not-detected
-
Second group:
Transcribed
Not-detected
Percentage detection
First group:
10
20
30
40
50
60
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80
90
100
-
Second group:
10
20
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100
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