Search results for the GEO ID: GSE38749 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM949009 | GPL570 |
|
primary tumor 51.17 months survival
|
primary tumor
|
age (y): 88
gender: female
histological type: Intestinal
tumor stage (ajcc): IIIa
time (months) overall survival: 51.17
status: alive
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949009
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949009/suppl/GSM949009_c2_ET016.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949010 | GPL570 |
|
primary tumor 64.83 months survival
|
primary tumor
|
age (y): 75
gender: female
histological type: Mixed
tumor stage (ajcc): IIIa
time (months) overall survival: 64.83
status: alive
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949010
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949010/suppl/GSM949010_c3_ET017.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949011 | GPL570 |
|
primary tumor 58.23 months survival
|
primary tumor
|
age (y): 44
gender: male
histological type: Diffuse
tumor stage (ajcc): IIIa
time (months) overall survival: 58.23
status: alive
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949011
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949011/suppl/GSM949011_c4_ET030.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949012 | GPL570 |
|
primary tumor 58.77 months survival
|
primary tumor
|
age (y): 61
gender: male
histological type: Intestinal
tumor stage (ajcc): IIIb
time (months) overall survival: 58.77
status: alive
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949012
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949012/suppl/GSM949012_c5_ET024.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949013 | GPL570 |
|
primary tumor 53.1 months survival
|
primary tumor
|
age (y): 54
gender: female
histological type: Diffuse
tumor stage (ajcc): III
time (months) overall survival: 53.1
status: alive
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949013
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949013/suppl/GSM949013_c6_ET060.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949014 | GPL570 |
|
primary tumor 24.5 months survival
|
primary tumor
|
age (y): 54
gender: female
histological type: Diffuse
tumor stage (ajcc): IIIa
time (months) overall survival: 24.5
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949014
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949014/suppl/GSM949014_c8_ET047.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949015 | GPL570 |
|
primary tumor 33.57 months survival
|
primary tumor
|
age (y): 89
gender: male
histological type: Diffuse
tumor stage (ajcc): IIIb
time (months) overall survival: 33.57
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949015
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949015/suppl/GSM949015_c9_ET137.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949016 | GPL570 |
|
primary tumor 22.4 months survival
|
primary tumor
|
age (y): 75
gender: female
histological type: Intestinal
tumor stage (ajcc): III
time (months) overall survival: 22.4
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949016
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949016/suppl/GSM949016_t2_ET070.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949017 | GPL570 |
|
primary tumor 13.6 months survival
|
primary tumor
|
age (y): 41
gender: male
histological type: Diffuse
tumor stage (ajcc): IIIa
time (months) overall survival: 13.6
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949017
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949017/suppl/GSM949017_t3_ET031.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949018 | GPL570 |
|
primary tumor 3.67 months survival
|
primary tumor
|
age (y): 38
gender: male
histological type: Diffuse
tumor stage (ajcc): IIIa
time (months) overall survival: 3.67
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949018
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949018/suppl/GSM949018_t4_ET028.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949019 | GPL570 |
|
primary tumor 12.93 months survival
|
primary tumor
|
age (y): 65
gender: male
histological type: Intestinal
tumor stage (ajcc): III
time (months) overall survival: 12.93
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949019
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949019/suppl/GSM949019_t5_ET066.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949020 | GPL570 |
|
primary tumor 13.1 months survival
|
primary tumor
|
age (y): 65
gender: male
histological type: Diffuse
tumor stage (ajcc): IIIa
time (months) overall survival: 13.1
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949020
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949020/suppl/GSM949020_t6_ET040.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949021 | GPL570 |
|
primary tumor 17.3 months survival
|
primary tumor
|
age (y): 50
gender: male
histological type: Diffuse
tumor stage (ajcc): IIIa
time (months) overall survival: 17.3
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949021
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949021/suppl/GSM949021_t7_ET053.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949022 | GPL570 |
|
primary tumor 4.37 months survival
|
primary tumor
|
age (y): 65
gender: female
histological type: Diffuse
tumor stage (ajcc): IIIa
time (months) overall survival: 4.37
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949022
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949022/suppl/GSM949022_t8_ET015.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
|
GSM949023 | GPL570 |
|
primary tumor 4.27 months survival
|
primary tumor
|
age (y): 58
gender: male
histological type: Diffuse
tumor stage (ajcc): IIIb
time (months) overall survival: 4.27
status: death
tissue: gastric cancer tumor
|
Gene expression data from gastric cancer of patient undergoing gastrectomy as a primary treatment
|
Sample_geo_accession | GSM949023
| Sample_status | Public on Sep 01 2012
| Sample_submission_date | Jun 15 2012
| Sample_last_update_date | Sep 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA and Clean-up (Quiagen) werw performed according to the manufacturers' instructions .
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| Sample_data_processing | The data normalization and probe summarization were performed by Robust Multichip Analysis (RMA) using R Bioconductor software.
| Sample_platform_id | GPL570
| Sample_contact_name | Fatima,Solange,Pasini
| Sample_contact_email | fatima@lim24.fm.usp.br
| Sample_contact_phone | 551130826580
| Sample_contact_fax | 551130826580
| Sample_contact_laboratory | LIM24
| Sample_contact_department | Departamento de Radiologia e Oncologia
| Sample_contact_institute | Faculdade de Medicina da USP
| Sample_contact_address | Av. Dr. Arnaldo, 455 sala 4115
| Sample_contact_city | São Paulo
| Sample_contact_state | São Paulo
| Sample_contact_zip/postal_code | 01246-903
| Sample_contact_country | Brazil
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949023/suppl/GSM949023_t9_ET001.CEL.gz
| Sample_series_id | GSE38749
| Sample_data_row_count | 54675
| |
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