Search results for the GEO ID: GSE38816  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM949687 | GPL570 |
|
LPJ021 CD20hi B-cells
|
CD20hi Follicular Lymphoma B-cells
|
patient identifier: LPJ021
gender: Male
age: 41
type: Follicular Lymphoma
subset: CD20hi B-cell
|
|
| Sample_geo_accession | GSM949687
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to Affymetrix manufacturers protocol
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949687/suppl/GSM949687_MRG_LPJ021_CD20hi.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM949688 | GPL570 |
|
LPJ021 CD20int B-cells
|
CD20int Follicular Lymphoma B-cells
|
patient identifier: LPJ021
gender: Male
age: 41
type: Follicular Lymphoma
subset: CD20int B-cell
|
|
| Sample_geo_accession | GSM949688
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to Affymetrix manufacturers protocol
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949688/suppl/GSM949688_MRG_LPJ021_CD20int.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM949689 | GPL570 |
|
LPJ023 CD20hi B-cells
|
CD20hi Follicular Lymphoma B-cells
|
patient identifier: LPJ023
gender: Male
age: 54
type: Follicular Lymphoma
subset: CD20hi B-cell
|
|
| Sample_geo_accession | GSM949689
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to Affymetrix manufacturers protocol
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949689/suppl/GSM949689_MRG_LPJ023_CD20hi.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM949690 | GPL570 |
|
LPJ023 CD20int B-cells
|
CD20int Follicular Lymphoma B-cells
|
patient identifier: LPJ023
gender: Male
age: 54
type: Follicular Lymphoma
subset: CD20int B-cell
|
|
| Sample_geo_accession | GSM949690
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to Affymetrix manufacturers protocol
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949690/suppl/GSM949690_MRG_LPJ023_CD20int.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM949691 | GPL570 |
|
LPJ040 CD20hi B-cells
|
CD20hi Follicular Lymphoma B-cells
|
patient identifier: LPJ040
gender: Male
age: 29
type: Follicular Lymphoma
subset: CD20hi B-cell
|
|
| Sample_geo_accession | GSM949691
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to Affymetrix manufacturers protocol
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949691/suppl/GSM949691_MRG_LPJ040a_CD20hi.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM949692 | GPL570 |
|
LPJ040 CD20int B-cells
|
CD20int Follicular Lymphoma B-cells
|
patient identifier: LPJ040
gender: Male
age: 29
type: Follicular Lymphoma
subset: CD20int B-cell
|
|
| Sample_geo_accession | GSM949692
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to Affymetrix manufacturers protocol
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949692/suppl/GSM949692_MRG_LPJ040a_CD20int.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM949693 | GPL570 |
|
LPJ041a CD20hi B-cells
|
CD20hi Follicular Lymphoma B-cells
|
patient identifier: LPJ041a
gender: Female
age: 36
type: Follicular Lymphoma
subset: CD20hi B-cell
|
|
| Sample_geo_accession | GSM949693
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to Affymetrix manufacturers protocol
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949693/suppl/GSM949693_MRG_LPJ041a_CD20hi.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM949694 | GPL570 |
|
LPJ041a CD20int B-cells
|
CD20int Follicular Lymphoma B-cells
|
patient identifier: LPJ041a
gender: Female
age: 36
type: Follicular Lymphoma
subset: CD20int B-cell
|
|
| Sample_geo_accession | GSM949694
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to Affymetrix manufacturers protocol
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949694/suppl/GSM949694_MRG_LPJ041a_CD20int.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM949722 | GPL570 |
|
LPJ041b Tumor B-cells
|
Tumor Follicular Lymphoma B-cells
|
patient identifier: LPJ041b
gender: Female
age: 36
type: Follicular Lymphoma Relapse
subset: Tumor B-cell
|
|
| Sample_geo_accession | GSM949722
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 18 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labelled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM949nnn/GSM949722/suppl/GSM949722_MRG_LPJ041b_Bcells.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950253 | GPL570 |
|
LPJ103 CD20hi B-cells
|
CD20hi Follicular Lymphoma B-cells
|
patient identifier: LPJ103
gender: Female
age: 38
type: Follicular Lymphoma
subset: CD20hi B-cells
|
|
| Sample_geo_accession | GSM950253
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950253/suppl/GSM950253_MRG_LPJ103_CD20hi.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950254 | GPL570 |
|
LPJ103 CD20int B-cells
|
CD20int Follicular Lymphoma B-cells
|
patient identifier: LPJ103
gender: Female
age: 38
type: Follicular Lymphoma
subset: CD20int B-cells
|
|
| Sample_geo_accession | GSM950254
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950254/suppl/GSM950254_MRG_LPJ103_CD20int.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950255 | GPL570 |
|
LPJ108 CD20hi B-cells
|
CD20hi Follicular Lymphoma B-cells
|
patient identifier: LPJ108
gender: Male
age: 36
type: Follicular Lymphoma
subset: CD20int B-cells
|
|
| Sample_geo_accession | GSM950255
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950255/suppl/GSM950255_MRG_LPJ108_CD20hi.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950256 | GPL570 |
|
LPJ108 CD20int B-cells
|
CD20int Follicular Lymphoma B-cells
|
patient identifier: LPJ108
gender: Male
age: 36
type: Follicular Lymphoma
subset: CD20int B-cells
|
|
| Sample_geo_accession | GSM950256
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950256/suppl/GSM950256_MRG_LPJ108_CD20int.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950257 | GPL570 |
|
LPJ114 CD20hi B-cells
|
CD20hi Follicular Lymphoma B-cells
|
patient identifier: LPJ114
gender: Male
age: 42
type: Follicular Lymphoma
subset: CD20hi B-cells
|
|
| Sample_geo_accession | GSM950257
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950257/suppl/GSM950257_MRG_LPJ114_CD20hi.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950258 | GPL570 |
|
LPJ114 CD20int B-cells
|
CD20int Follicular Lymphoma B-cells
|
patient identifier: LPJ114
gender: Male
age: 42
type: Follicular Lymphoma
subset: CD20int B-cells
|
|
| Sample_geo_accession | GSM950258
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950258/suppl/GSM950258_MRG_LPJ114_CD20int.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950259 | GPL570 |
|
LPJ128a CD20hi B-cells
|
CD20hi Follicular Lymphoma B-cells
|
patient identifier: LPJ128
gender: Female
age: 40
type: Follicular Lymphoma
subset: CD20hi B-cells
|
|
| Sample_geo_accession | GSM950259
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950259/suppl/GSM950259_MRG_LPJ128a_CD20hi.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950260 | GPL570 |
|
LPJ128a CD20int B-cells
|
CD20int Follicular Lymphoma B-cells
|
patient identifier: LPJ128
gender: Female
age: 40
type: Follicular Lymphoma
subset: CD20int B-cells
|
|
| Sample_geo_accession | GSM950260
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950260/suppl/GSM950260_MRG_LPJ128a_CD20int.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
GSM950261 | GPL570 |
|
LPJ128b Tumor B-cells
|
Follicular Lymphoma B-cells, Relapse
|
patient identifier: LPJ128
gender: Female
age: 40
type: Follicular Lymphoma
subset: Relapse Tumor B-cells
|
|
| Sample_geo_accession | GSM950261
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | Jun 19 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA and DNA were extracted using a Qiagen AllPrep kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Labeled according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridized overnight according to the manufacturer's protocol using an Affymetrix GeneChip Hybridization Oven 640
| | Sample_scan_protocol | Scanned according to the manufacturer's protocol using an Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | Data were RMA normalized using the "ExpressionFileCreator" module of GenePattern with the default settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,R,Green
| | Sample_contact_email | michael.r.green@stanford.edu
| | Sample_contact_laboratory | Levy and Alizadeh Labs
| | Sample_contact_department | School of Medicine
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Drive, CCSR 1110
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM950nnn/GSM950261/suppl/GSM950261_MRG_LPJ128b_Bcells.CEL.gz
| | Sample_series_id | GSE38816
| | Sample_data_row_count | 54675
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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