Search results for the GEO ID: GSE38880  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM951361 | GPL1261 |
|
STAT control male 1
|
control
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951361
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951361/suppl/GSM951361_SY_CM1.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951362 | GPL1261 |
|
STAT control male 2
|
control
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951362
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951362/suppl/GSM951362_SY_CM2.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951363 | GPL1261 |
|
STAT control male 3
|
control
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951363
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951363/suppl/GSM951363_SY_CM7.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951364 | GPL1261 |
|
STAT control male 4
|
control
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951364
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951364/suppl/GSM951364_SY_CM3.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951365 | GPL1261 |
|
STAT control male 5
|
control
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951365
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951365/suppl/GSM951365_SY_CM6.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951366 | GPL1261 |
|
STAT control male 6
|
control
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951366
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951366/suppl/GSM951366_SY_CM9.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951367 | GPL1261 |
|
STAT pcn male 1
|
low dose penicillin
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951367
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951367/suppl/GSM951367_SY_PM3.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951368 | GPL1261 |
|
STAT pcn male 2
|
low dose penicillin
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951368
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951368/suppl/GSM951368_SY_PM4.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951369 | GPL1261 |
|
STAT pcn male 3
|
low dose penicillin
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951369
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951369/suppl/GSM951369_SY_PM8.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951370 | GPL1261 |
|
STAT pcn male 4
|
low dose penicillin
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951370
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951370/suppl/GSM951370_SY_PM2.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951371 | GPL1261 |
|
STAT pcn male 5
|
low dose penicillin
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951371
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951371/suppl/GSM951371_SY_PM10.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
GSM951372 | GPL1261 |
|
STAT pcn male 6
|
low dose penicillin
|
strain gender: C57BL/6
gender: male
tissue: liver
|
mRNA from total RNA converted to cRNA
|
| Sample_geo_accession | GSM951372
| | Sample_status | Public on Jul 01 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jul 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6 mice were controls and not given any antibiotics. 6 mice given low dose penicillin via drinking water. Sacrificed after 7 weeks of intervention and liver specimens resected.
| | Sample_growth_protocol_ch1 | C57BL6 mice obtained from Jackson Labs. Given ad libitum access to food and water. 12h/12h light/dark cycles.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extractions performed by RNeasy Mini Kit (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled target cRNA population was generated with the Affymetrix 3’-IVT Express kit
| | Sample_hyb_protocol | labeled and fragmented cRNA hybridized to MG-430 2.0 Affymetrix GeneChips using standard techniques recommended by the manufacturer.
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Agilent Genespring GX11 program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jiri,,Zavadil
| | Sample_contact_email | jiri.zavadil@med.nyu.edu
| | Sample_contact_phone | 212-263-8048
| | Sample_contact_department | Pathology
| | Sample_contact_institute | NYU SoM
| | Sample_contact_address |
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951372/suppl/GSM951372_SY_PM12.CEL.gz
| | Sample_series_id | GSE38880
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
