Search results for the GEO ID: GSE38885  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM951416 | GPL570 |
|
Tumor_CASE 1
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10706
|
CASE 1
|
| Sample_geo_accession | GSM951416
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951416/suppl/GSM951416_hyb10706.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951417 | GPL570 |
|
Tumor_CASE 2
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6597
|
CASE 2
|
| Sample_geo_accession | GSM951417
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951417/suppl/GSM951417_hyb6597.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951418 | GPL570 |
|
Tumor_CASE 3
|
Testis
|
immune status: Post-transplant lymphoma
tissue: Testis
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10676
|
CASE 3
|
| Sample_geo_accession | GSM951418
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951418/suppl/GSM951418_hyb10676.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951419 | GPL570 |
|
Tumor_CASE 4
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6554
|
CASE 4
|
| Sample_geo_accession | GSM951419
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951419/suppl/GSM951419_hyb6554.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951420 | GPL570 |
|
Tumor_CASE 5
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6566
|
CASE 5
|
| Sample_geo_accession | GSM951420
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951420/suppl/GSM951420_hyb6566.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951421 | GPL570 |
|
Tumor_CASE 6
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6569
|
CASE 6
|
| Sample_geo_accession | GSM951421
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951421/suppl/GSM951421_hyb6569.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951422 | GPL570 |
|
Tumor_CASE 7
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6592
|
CASE 7
|
| Sample_geo_accession | GSM951422
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951422/suppl/GSM951422_hyb6592.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951423 | GPL570 |
|
Tumor_CASE 8
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6606
|
CASE 8
|
| Sample_geo_accession | GSM951423
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951423/suppl/GSM951423_hyb6606.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951424 | GPL570 |
|
Tumor_CASE 9
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6556
|
CASE 9
|
| Sample_geo_accession | GSM951424
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951424/suppl/GSM951424_hyb6556.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951425 | GPL570 |
|
Tumor_CASE 10
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10730
|
CASE 10
|
| Sample_geo_accession | GSM951425
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951425/suppl/GSM951425_hyb10730.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951426 | GPL570 |
|
Tumor_CASE 11
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10712
|
CASE 11
|
| Sample_geo_accession | GSM951426
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951426/suppl/GSM951426_hyb10712.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951427 | GPL570 |
|
Tumor_CASE 12
|
Waldeyer
|
immune status: Post-transplant lymphoma
tissue: Waldeyer
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10715
|
CASE 12
|
| Sample_geo_accession | GSM951427
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951427/suppl/GSM951427_hyb10715.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951428 | GPL570 |
|
Tumor_CASE 13
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6580
|
CASE 13
|
| Sample_geo_accession | GSM951428
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951428/suppl/GSM951428_hyb6580.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951429 | GPL570 |
|
Tumor_CASE 14
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10681
|
CASE 14
|
| Sample_geo_accession | GSM951429
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951429/suppl/GSM951429_hyb10681.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951430 | GPL570 |
|
Tumor_CASE 15
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6568
|
CASE 15
|
| Sample_geo_accession | GSM951430
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951430/suppl/GSM951430_hyb6568.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951431 | GPL570 |
|
Tumor_CASE 16
|
Waldeyer
|
immune status: Post-transplant lymphoma
tissue: Waldeyer
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10675
|
CASE 16
|
| Sample_geo_accession | GSM951431
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951431/suppl/GSM951431_hyb10675.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951432 | GPL570 |
|
Tumor_CASE 17
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10690
|
CASE 17
|
| Sample_geo_accession | GSM951432
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951432/suppl/GSM951432_hyb10690.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951433 | GPL570 |
|
Tumor_CASE 18
|
Waldeyer
|
immune status: Post-transplant lymphoma
tissue: Waldeyer
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10709
|
CASE 18
|
| Sample_geo_accession | GSM951433
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951433/suppl/GSM951433_hyb10709.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951434 | GPL570 |
|
Tumor_CASE 19
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6593
|
CASE 19
|
| Sample_geo_accession | GSM951434
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951434/suppl/GSM951434_hyb6593.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951435 | GPL570 |
|
Tumor_CASE 20
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10724
|
CASE 20
|
| Sample_geo_accession | GSM951435
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951435/suppl/GSM951435_hyb10724.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951436 | GPL570 |
|
Tumor_CASE 21
|
Urinary tract
|
immune status: Post-transplant lymphoma
tissue: Urinary tract
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6575
|
CASE 21
|
| Sample_geo_accession | GSM951436
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951436/suppl/GSM951436_hyb6575.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951437 | GPL570 |
|
Tumor_CASE 22
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10703
|
CASE 22
|
| Sample_geo_accession | GSM951437
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951437/suppl/GSM951437_hyb10703.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951438 | GPL570 |
|
Tumor_CASE 23
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6599
|
CASE 23
|
| Sample_geo_accession | GSM951438
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951438/suppl/GSM951438_hyb6599.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951439 | GPL570 |
|
Tumor_CASE 24
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10697
|
CASE 24
|
| Sample_geo_accession | GSM951439
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951439/suppl/GSM951439_hyb10697.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951441 | GPL570 |
|
Tumor_CASE 26
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10727
|
CASE 26
|
| Sample_geo_accession | GSM951441
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951441/suppl/GSM951441_hyb10727.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951442 | GPL570 |
|
Tumor_CASE 27
|
BALT
|
immune status: Post-transplant lymphoma
tissue: BALT
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10685
|
CASE 27
|
| Sample_geo_accession | GSM951442
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951442/suppl/GSM951442_hyb10685.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951443 | GPL570 |
|
Tumor_CASE 28
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10688
|
CASE 28
|
| Sample_geo_accession | GSM951443
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951443/suppl/GSM951443_hyb10688.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951444 | GPL570 |
|
Tumor_CASE 29
|
Urinary tract
|
immune status: Post-transplant lymphoma
tissue: Urinary tract
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6571
|
CASE 29
|
| Sample_geo_accession | GSM951444
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951444/suppl/GSM951444_hyb6571.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951445 | GPL570 |
|
Tumor_CASE 30
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6564
|
CASE 30
|
| Sample_geo_accession | GSM951445
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951445/suppl/GSM951445_hyb6564.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951446 | GPL570 |
|
Tumor_CASE 31
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 10682
|
CASE 31
|
| Sample_geo_accession | GSM951446
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951446/suppl/GSM951446_hyb10682.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951447 | GPL570 |
|
Tumor_CASE 32
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6694
|
CASE 32
|
| Sample_geo_accession | GSM951447
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951447/suppl/GSM951447_hyb6694.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951448 | GPL570 |
|
Tumor_CASE 33
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(+)
chip number: 6579
|
CASE 33
|
| Sample_geo_accession | GSM951448
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951448/suppl/GSM951448_hyb6579.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951449 | GPL570 |
|
Tumor_CASE 34
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(+)
chip number: 6595
|
CASE 34
|
| Sample_geo_accession | GSM951449
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951449/suppl/GSM951449_hyb6595.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951450 | GPL570 |
|
Tumor_CASE 35
|
Waldeyer
|
immune status: Post-transplant lymphoma
tissue: Waldeyer
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(+)
chip number: 6582
|
CASE 35
|
| Sample_geo_accession | GSM951450
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951450/suppl/GSM951450_hyb6582.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951451 | GPL570 |
|
Tumor_CASE 36
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(+)
chip number: 10696
|
CASE 36
|
| Sample_geo_accession | GSM951451
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951451/suppl/GSM951451_hyb10696.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951452 | GPL570 |
|
Tumor_CASE 37
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(+)
chip number: 6602
|
CASE 37
|
| Sample_geo_accession | GSM951452
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951452/suppl/GSM951452_hyb6602.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951453 | GPL570 |
|
Tumor_CASE 38
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(+)
chip number: 6585
|
CASE 38
|
| Sample_geo_accession | GSM951453
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951453/suppl/GSM951453_hyb6585.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951454 | GPL570 |
|
Tumor_CASE 39
|
Lymph node
|
immune status: Post-transplant lymphoma
tissue: Lymph node
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(+)
chip number: 6590
|
CASE 39
|
| Sample_geo_accession | GSM951454
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951454/suppl/GSM951454_hyb6590.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951455 | GPL570 |
|
Tumor_CASE 40
|
Gut-associated lymphoid tissue
|
immune status: Post-transplant lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Burkitt Lymphoma
ebv status: EBV(+)
chip number: 10733
|
CASE 40
|
| Sample_geo_accession | GSM951455
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951455/suppl/GSM951455_hyb10733.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951456 | GPL570 |
|
Tumor_CASE 41
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6598
|
CASE 41
|
| Sample_geo_accession | GSM951456
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951456/suppl/GSM951456_hyb6598.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951457 | GPL570 |
|
Tumor_CASE 42
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6561
|
CASE 42
|
| Sample_geo_accession | GSM951457
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951457/suppl/GSM951457_hyb6561.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951458 | GPL570 |
|
Tumor_CASE 43
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10710
|
CASE 43
|
| Sample_geo_accession | GSM951458
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951458/suppl/GSM951458_hyb10710.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951459 | GPL570 |
|
Tumor_CASE 44
|
mediastinum
|
immune status: Immunocompetent lymphoma
tissue: mediastinum
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6607
|
CASE 44
|
| Sample_geo_accession | GSM951459
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951459/suppl/GSM951459_hyb6607.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951460 | GPL570 |
|
Tumor_CASE 45
|
Gut-associated lymphoid tissue
|
immune status: Immunocompetent lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10692
|
CASE 45
|
| Sample_geo_accession | GSM951460
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951460/suppl/GSM951460_hyb10692.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951461 | GPL570 |
|
Tumor_CASE 46
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6603
|
CASE 46
|
| Sample_geo_accession | GSM951461
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951461/suppl/GSM951461_hyb6603.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951462 | GPL570 |
|
Tumor_CASE 47
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6600
|
CASE 47
|
| Sample_geo_accession | GSM951462
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951462/suppl/GSM951462_hyb6600.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951463 | GPL570 |
|
Tumor_CASE 48
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6573
|
CASE 48
|
| Sample_geo_accession | GSM951463
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951463/suppl/GSM951463_hyb6573.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951464 | GPL570 |
|
Tumor_CASE 49
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6576
|
CASE 49
|
| Sample_geo_accession | GSM951464
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951464/suppl/GSM951464_hyb6576.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951465 | GPL570 |
|
Tumor_CASE 50
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6587
|
CASE 50
|
| Sample_geo_accession | GSM951465
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951465/suppl/GSM951465_hyb6587.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951466 | GPL570 |
|
Tumor_CASE 51
|
Extracranial fronto-parietal
|
immune status: Immunocompetent lymphoma
tissue: Extracranial fronto-parietal
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6596
|
CASE 51
|
| Sample_geo_accession | GSM951466
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951466/suppl/GSM951466_hyb6596.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951467 | GPL570 |
|
Tumor_CASE 52
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10683
|
CASE 52
|
| Sample_geo_accession | GSM951467
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951467/suppl/GSM951467_hyb10683.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951468 | GPL570 |
|
Tumor_CASE 53
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6563
|
CASE 53
|
| Sample_geo_accession | GSM951468
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951468/suppl/GSM951468_hyb6563.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951469 | GPL570 |
|
Tumor_CASE 54
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10728
|
CASE 54
|
| Sample_geo_accession | GSM951469
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951469/suppl/GSM951469_hyb10728.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951470 | GPL570 |
|
Tumor_CASE 55
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6581
|
CASE 55
|
| Sample_geo_accession | GSM951470
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951470/suppl/GSM951470_hyb6581.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951471 | GPL570 |
|
Tumor_CASE 56
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 6570
|
CASE 56
|
| Sample_geo_accession | GSM951471
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951471/suppl/GSM951471_hyb6570.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951472 | GPL570 |
|
Tumor_CASE 57
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10719
|
CASE 57
|
| Sample_geo_accession | GSM951472
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951472/suppl/GSM951472_hyb10719.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951473 | GPL570 |
|
Tumor_CASE 58
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Diffuse large B-cell lymphoma (DLBCL)
ebv status: EBV(-)
chip number: 10714
|
CASE 58
|
| Sample_geo_accession | GSM951473
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951473/suppl/GSM951473_hyb10714.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951474 | GPL570 |
|
Tumor_CASE 59
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(-)
chip number: 6589
|
CASE 59
|
| Sample_geo_accession | GSM951474
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951474/suppl/GSM951474_hyb6589.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951475 | GPL570 |
|
Tumor_CASE 60
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(-)
chip number: 10725
|
CASE 60
|
| Sample_geo_accession | GSM951475
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951475/suppl/GSM951475_hyb10725.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951476 | GPL570 |
|
Tumor_CASE 61
|
Gut-associated lymphoid tissue
|
immune status: Immunocompetent lymphoma
tissue: Gut-associated lymphoid tissue
lymphoma subtype: DLBCL (Burkitt-like lymphoma (BLL))
ebv status: EBV(-)
chip number: 10686
|
CASE 61
|
| Sample_geo_accession | GSM951476
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951476/suppl/GSM951476_hyb10686.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951477 | GPL570 |
|
Tumor_CASE 62
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Burkitt Lymphoma
ebv status: EBV(-)
chip number: 10713
|
CASE 62
|
| Sample_geo_accession | GSM951477
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951477/suppl/GSM951477_hyb10713.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951478 | GPL570 |
|
Tumor_CASE 63
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Burkitt Lymphoma
ebv status: EBV(-)
chip number: 10677
|
CASE 63
|
| Sample_geo_accession | GSM951478
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951478/suppl/GSM951478_hyb10677.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951479 | GPL570 |
|
Tumor_CASE 64
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Burkitt Lymphoma
ebv status: EBV(-)
chip number: 10695
|
CASE 64
|
| Sample_geo_accession | GSM951479
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951479/suppl/GSM951479_hyb10695.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
|
GSM951480 | GPL570 |
|
Tumor_CASE 65
|
Lymph node
|
immune status: Immunocompetent lymphoma
tissue: Lymph node
lymphoma subtype: Burkitt Lymphoma
ebv status: EBV(+)
chip number: 10731
|
CASE 65
|
| Sample_geo_accession | GSM951480
| | Sample_status | Public on Jun 23 2012
| | Sample_submission_date | Jun 22 2012
| | Sample_last_update_date | Jun 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Frozen tissue sections were immediately dissolved in Trizol.
| | Sample_growth_protocol_ch1 | Patients diagnosed with PTLD were biopsied and tumor tissues were frozen or paraffin-embedded.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug of cRNA were hybridized for 16hr at 45C on an Affymetrix HG-U133 Plus 2.0 GeneChip. The GeneChip was washed and stained in the Affymetric Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Array Studio version 5.0 (Omicsoft Corporation). Data were normalized using RMA as implemented in the Affy package (version 1.32.1) of Bioconductor. Expression values are represented on a log2-scale. Control probes are discarded.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Julio,,Finalet
| | Sample_contact_email | julio.finaletferreiro@med.kuleuven.be
| | Sample_contact_institute | KULeuven
| | Sample_contact_address | Herestraat 49
| | Sample_contact_city | Leuven
| | Sample_contact_zip/postal_code | 3000
| | Sample_contact_country | Belgium
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM951nnn/GSM951480/suppl/GSM951480_hyb10731.CEL.gz
| | Sample_series_id | GSE38885
| | Sample_data_row_count | 54613
| | |
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