Search results for the GEO ID: GSE38987  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM953326 | GPL570 |
|
AML [ ID_01 ]
|
cytogenetically normal AML (CN-AML), CEBPA: mut, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_01 ], ID01_ULM_00127.CEL
|
| Sample_geo_accession | GSM953326
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953326/suppl/GSM953326_ID01_ULM_00127.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953327 | GPL570 |
|
AML [ ID_03 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: peripheral blood
|
AML [ ID_03 ], ID03_ULM_00111.CEL
|
| Sample_geo_accession | GSM953327
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953327/suppl/GSM953327_ID03_ULM_00111.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953328 | GPL570 |
|
AML [ ID_07 ]
|
core binding factor AML, t(8;21), CEBPA: n/a, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: peripheral blood
|
AML [ ID_07 ], ID07_UB_11102006_05PB4922.CEL
|
| Sample_geo_accession | GSM953328
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953328/suppl/GSM953328_ID07_UB_11102006_05PB4922.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953329 | GPL570 |
|
AML [ ID_10 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: mut, FLT3-TKD: wt, NPM1: mut
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_10 ], ID10_UB_06KM2582_15052008.CEL
|
| Sample_geo_accession | GSM953329
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953329/suppl/GSM953329_ID10_UB_06KM2582_15052008.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953330 | GPL570 |
|
AML [ ID_16 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_16 ], ID16_ULM_00129.CEL
|
| Sample_geo_accession | GSM953330
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953330/suppl/GSM953330_ID16_ULM_00129.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953331 | GPL570 |
|
AML [ ID_20 ]
|
cytogenetically normal AML (CN-AML), CEBPA: mut, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: peripheral blood
|
AML [ ID_20 ], ID20_ULM_00128.CEL
|
| Sample_geo_accession | GSM953331
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953331/suppl/GSM953331_ID20_ULM_00128.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953332 | GPL570 |
|
AML [ ID_21 ]
|
cytogenetically normal AML (CN-AML), CEBPA: mut, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: peripheral blood
|
AML [ ID_21 ], ID21_UB_110706_05KM3026.CEL
|
| Sample_geo_accession | GSM953332
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953332/suppl/GSM953332_ID21_UB_110706_05KM3026.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953333 | GPL570 |
|
AML [ ID_22 ]
|
cytogenetically normal AML (CN-AML), CEBPA: mut, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_22 ], ID22_ULM_00059.CEL
|
| Sample_geo_accession | GSM953333
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953333/suppl/GSM953333_ID22_ULM_00059.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953334 | GPL570 |
|
AML [ ID_23 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: wt, FLT3-TKD: mut, NPM1: mut
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_23 ], ID23_ULM_00044.CEL
|
| Sample_geo_accession | GSM953334
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953334/suppl/GSM953334_ID23_ULM_00044.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953335 | GPL570 |
|
AML [ ID_24 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_24 ], ID24_ULM_00043.CEL
|
| Sample_geo_accession | GSM953335
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953335/suppl/GSM953335_ID24_ULM_00043.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953336 | GPL570 |
|
AML [ ID_25 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: mut, FLT3-TKD: wt, NPM1: mut
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_25 ], ID25_ULM_00119.CEL
|
| Sample_geo_accession | GSM953336
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953336/suppl/GSM953336_ID25_ULM_00119.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953337 | GPL570 |
|
AML [ ID_30 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: peripheral blood
|
AML [ ID_30 ], ID30_MR_02062006_05PB1734.CEL
|
| Sample_geo_accession | GSM953337
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953337/suppl/GSM953337_ID30_MR_02062006_05PB1734.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953338 | GPL570 |
|
AML [ ID_31 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: mut
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_31 ], ID31_MR_21052006_05KM953.CEL
|
| Sample_geo_accession | GSM953338
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953338/suppl/GSM953338_ID31_MR_21052006_05KM953.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953339 | GPL570 |
|
AML [ ID_32 ]
|
cytogenetically normal AML (CN-AML), CEBPA: mut, FLT3-ITD: wt, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_32 ], ID32_UB_13112006_06KM1561.CEL
|
| Sample_geo_accession | GSM953339
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953339/suppl/GSM953339_ID32_UB_13112006_06KM1561.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953340 | GPL570 |
|
AML [ ID_33 ]
|
cytogenetically normal AML (CN-AML), CEBPA: wt, FLT3-ITD: mut, FLT3-TKD: wt, NPM1: mut
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_33 ], ID33_UB_13112006_06KM1590.CEL
|
| Sample_geo_accession | GSM953340
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953340/suppl/GSM953340_ID33_UB_13112006_06KM1590.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953341 | GPL570 |
|
AML [ ID_42 ]
|
cytogenetically normal AML (CN-AML), CEBPA: n/a, FLT3-ITD: mut, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_42 ], ID42_ULM_00085.CEL
|
| Sample_geo_accession | GSM953341
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953341/suppl/GSM953341_ID42_ULM_00085.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
|
GSM953342 | GPL570 |
|
AML [ ID_51 ]
|
cytogenetically normal AML (CN-AML), CEBPA: mut, FLT3-ITD: mut, FLT3-TKD: wt, NPM1: wt
|
diagnosis: Acute myeloid leukemia (AML)
cell type: mononuclear
cell source: bone marrow
|
AML [ ID_51 ], ID51_MB_080806_05KM1583-2.CEL
|
| Sample_geo_accession | GSM953342
| | Sample_status | Public on Sep 27 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Diagnostic samples were collected from untreated patients (de novo AML).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | The samples were scanned on Affymetrix GeneChip Scanner GCS3000 system using default settings and the software GCOS version 1.2 or newer.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Anna,,Dolnik
| | Sample_contact_email | anna.dolnik@uni-ulm.de
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University Hospital of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953342/suppl/GSM953342_ID51_MB_080806_05KM1583-2.CEL.gz
| | Sample_series_id | GSE38987
| | Sample_data_row_count | 54675
| | |
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