Search results for the GEO ID: GSE38988  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM953345 | GPL1261 |
|
Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 COE/W, biological rep1
|
Murine Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 COE/W pancreas
|
strain background: mixed C57/BL/6,129/BALB/c
genotype/variation: Pdx1-Cre+;PtenL/W;K-rasG12D/W,Cox-2 COE/W
genotype/variation: loss of Pten (Pten +/-) and K-ras activation (K-rasG12D) with COX-2 over-expression (Cox-2 COE)
age: older than 8 weeks
tissue: pancreatic tumor
|
Gene expression data from murine pancreatic ductal adenocarcinomas
|
| Sample_geo_accession | GSM953345
| | Sample_status | Public on Jun 29 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Jun 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (Bioconductor v.2.8/ R v.2.13).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953345/suppl/GSM953345_2164.CEL.gz
| | Sample_series_id | GSE38988
| | Sample_data_row_count | 45101
| | |
|
GSM953346 | GPL1261 |
|
Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 COE/W, biological rep2
|
Murine Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 COE/W pancreas
|
strain background: mixed C57/BL/6,129/BALB/c
genotype/variation: Pdx1-Cre+;PtenL/W;K-rasG12D/W,Cox-2 COE/W
genotype/variation: loss of Pten (Pten +/-) and K-ras activation (K-rasG12D) with COX-2 over-expression (Cox-2 COE)
age: older than 8 weeks
tissue: pancreatic tumor
|
Gene expression data from murine pancreatic ductal adenocarcinomas
|
| Sample_geo_accession | GSM953346
| | Sample_status | Public on Jun 29 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Jun 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (Bioconductor v.2.8/ R v.2.13).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953346/suppl/GSM953346_723.CEL.gz
| | Sample_series_id | GSE38988
| | Sample_data_row_count | 45101
| | |
|
GSM953347 | GPL1261 |
|
Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 COE/W, biological rep3
|
Murine Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 COE/W pancreas
|
strain background: mixed C57/BL/6,129/BALB/c
genotype/variation: Pdx1-Cre+;PtenL/W;K-rasG12D/W,Cox-2 COE/W
genotype/variation: loss of Pten (Pten +/-) and K-ras activation (K-rasG12D) with COX-2 over-expression (Cox-2 COE)
age: older than 8 weeks
tissue: pancreatic tumor
|
Gene expression data from murine pancreatic ductal adenocarcinomas
|
| Sample_geo_accession | GSM953347
| | Sample_status | Public on Jun 29 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Jun 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (Bioconductor v.2.8/ R v.2.13).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953347/suppl/GSM953347_9542.CEL.gz
| | Sample_series_id | GSE38988
| | Sample_data_row_count | 45101
| | |
|
GSM953348 | GPL1261 |
|
Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 COE/W, biological rep4
|
Murine Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 COE/W pancreas
|
strain background: mixed C57/BL/6,129/BALB/c
genotype/variation: Pdx1-Cre+;PtenL/W;K-rasG12D/W,Cox-2 COE/W
genotype/variation: loss of Pten (Pten +/-) and K-ras activation (K-rasG12D) with COX-2 over-expression (Cox-2 COE)
age: older than 8 weeks
tissue: pancreatic tumor
|
Gene expression data from murine pancreatic ductal adenocarcinomas
|
| Sample_geo_accession | GSM953348
| | Sample_status | Public on Jun 29 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Jun 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (Bioconductor v.2.8/ R v.2.13).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953348/suppl/GSM953348_9547.CEL.gz
| | Sample_series_id | GSE38988
| | Sample_data_row_count | 45101
| | |
|
GSM953349 | GPL1261 |
|
Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 KO/KO, biological rep1
|
Murine Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 KO/KO pancreas
|
strain background: mixed C57/BL/6,129/BALB/c
genotype/variation: Pdx1-Cre+;PtenL/W;K-rasG12D/W,Cox-2 KO/KO
genotype/variation: loss of Pten (Pten +/-) and K-ras activation (K-rasG12D) with COX-2 knockout (Cox-2 KO)
age: older than 8 weeks
tissue: pancreatic tumor
|
Gene expression data from murine pancreatic ductal adenocarcinomas
|
| Sample_geo_accession | GSM953349
| | Sample_status | Public on Jun 29 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Jun 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (Bioconductor v.2.8/ R v.2.13).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953349/suppl/GSM953349_2805.CEL.gz
| | Sample_series_id | GSE38988
| | Sample_data_row_count | 45101
| | |
|
GSM953350 | GPL1261 |
|
Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 KO/KO, biological rep2
|
Murine Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 KO/KO pancreas
|
strain background: mixed C57/BL/6,129/BALB/c
genotype/variation: Pdx1-Cre+;PtenL/W;K-rasG12D/W,Cox-2 KO/KO
genotype/variation: loss of Pten (Pten +/-) and K-ras activation (K-rasG12D) with COX-2 knockout (Cox-2 KO)
age: older than 8 weeks
tissue: pancreatic tumor
|
Gene expression data from murine pancreatic ductal adenocarcinomas
|
| Sample_geo_accession | GSM953350
| | Sample_status | Public on Jun 29 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Jun 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (Bioconductor v.2.8/ R v.2.13).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953350/suppl/GSM953350_2908.CEL.gz
| | Sample_series_id | GSE38988
| | Sample_data_row_count | 45101
| | |
|
GSM953351 | GPL1261 |
|
Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 KO/KO, biological rep3
|
Murine Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 KO/KO pancreas
|
strain background: mixed C57/BL/6,129/BALB/c
genotype/variation: Pdx1-Cre+;PtenL/W;K-rasG12D/W,Cox-2 KO/KO
genotype/variation: loss of Pten (Pten +/-) and K-ras activation (K-rasG12D) with COX-2 knockout (Cox-2 KO)
age: older than 8 weeks
tissue: pancreatic tumor
|
Gene expression data from murine pancreatic ductal adenocarcinomas
|
| Sample_geo_accession | GSM953351
| | Sample_status | Public on Jun 29 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Jun 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (Bioconductor v.2.8/ R v.2.13).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953351/suppl/GSM953351_2842.CEL.gz
| | Sample_series_id | GSE38988
| | Sample_data_row_count | 45101
| | |
|
GSM953352 | GPL1261 |
|
Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 KO/KO, biological rep4
|
Murine Pdx1-Cre+;PtenL/W;K-rasG12D/W, Cox-2 KO/KO pancreas
|
strain background: mixed C57/BL/6,129/BALB/c
genotype/variation: Pdx1-Cre+;PtenL/W;K-rasG12D/W,Cox-2 KO/KO
genotype/variation: loss of Pten (Pten +/-) and K-ras activation (K-rasG12D) with COX-2 knockout (Cox-2 KO)
age: older than 8 weeks
tissue: pancreatic tumor
|
Gene expression data from murine pancreatic ductal adenocarcinomas
|
| Sample_geo_accession | GSM953352
| | Sample_status | Public on Jun 29 2012
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Jun 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Roche's MagNA Pure Compact Nucleic Acid Purification System was used for automated RNA isolation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As recommended by manufacturer
| | Sample_hyb_protocol | As recommended by manufacturer
| | Sample_scan_protocol | GeneChip Scanner 3000 7G was used for scanning. Affymetrix GeneChip Command Console software (AGCC 3.2) was used for image processing
| | Sample_data_processing | Data was normalized by GCRMA (Bioconductor v.2.8/ R v.2.13).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Linh,My,Tran
| | Sample_contact_email | linhtran@ucla.edu
| | Sample_contact_laboratory | Hong Wu
| | Sample_contact_department | 1Department of Molecular and Medical Pharmacology
| | Sample_contact_institute | University of Los Angeles
| | Sample_contact_address | 650 CE Young Drive South
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | California
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953352/suppl/GSM953352_3237.CEL.gz
| | Sample_series_id | GSE38988
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
