Search results for the GEO ID: GSE39001  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM953492 | GPL201 |
|
Healthy female endocervix CN01E
|
Healthy female endocervix
|
clinic: Control
sample id: CN01E
tissue: Healthy endocervix
|
|
| Sample_geo_accession | GSM953492
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953492/suppl/GSM953492_CN01E.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953493 | GPL201 |
|
Healthy female exocervix CN01X
|
Healthy female exocervix
|
clinic: Control
sample id: CN01X
tissue: Healthy exocervix
|
|
| Sample_geo_accession | GSM953493
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953493/suppl/GSM953493_CN01X.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953494 | GPL201 |
|
Healthy female endocervix CN03E
|
Healthy female endocervix
|
clinic: Control
sample id: CN03E
tissue: Healthy endocervix
|
|
| Sample_geo_accession | GSM953494
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953494/suppl/GSM953494_CN03E.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953495 | GPL201 |
|
Healthy female exocervix CN05X
|
Healthy female exocervix
|
clinic: Control
sample id: CN05X
tissue: Healthy exocervix
|
|
| Sample_geo_accession | GSM953495
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953495/suppl/GSM953495_CN05X.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953496 | GPL201 |
|
Healthy female endocervix CN06E
|
Healthy female endocervix
|
clinic: Control
sample id: CN06E
tissue: Healthy endocervix
|
|
| Sample_geo_accession | GSM953496
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953496/suppl/GSM953496_CN06E.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953497 | GPL201 |
|
Healthy female exocervix CN07X
|
Healthy female exocervix
|
clinic: Control
sample id: CN07X
tissue: Healthy exocervix
|
|
| Sample_geo_accession | GSM953497
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953497/suppl/GSM953497_CN07X.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953498 | GPL201 |
|
Healthy female endocervix CN10E
|
Healthy female endocervix
|
clinic: Control
sample id: CN10E
tissue: Healthy endocervix
|
|
| Sample_geo_accession | GSM953498
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953498/suppl/GSM953498_CN10E.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953499 | GPL201 |
|
Healthy female exocervix CN10X
|
Healthy female exocervix
|
clinic: Control
sample id: CN10X
tissue: Healthy exocervix
|
|
| Sample_geo_accession | GSM953499
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953499/suppl/GSM953499_CN10X.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953500 | GPL201 |
|
Healthy female endocervix CN13E
|
Healthy female endocervix
|
clinic: Control
sample id: CN13E
tissue: Healthy endocervix
|
|
| Sample_geo_accession | GSM953500
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953500/suppl/GSM953500_CN13E.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953501 | GPL201 |
|
Healthy female exocervix CN13X
|
Healthy female exocervix
|
clinic: Control
sample id: CN13X
tissue: Healthy exocervix
|
|
| Sample_geo_accession | GSM953501
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953501/suppl/GSM953501_CN13X.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953502 | GPL201 |
|
Healthy female endocervix CN19E
|
Healthy female endocervix
|
clinic: Control
sample id: CN19E
tissue: Healthy endocervix
|
|
| Sample_geo_accession | GSM953502
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953502/suppl/GSM953502_CN19E.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953503 | GPL201 |
|
Healthy female exocervix CN19X
|
Healthy female exocervix
|
clinic: Control
sample id: CN19X
tissue: Healthy exocervix
|
|
| Sample_geo_accession | GSM953503
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953503/suppl/GSM953503_CN19X.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953504 | GPL201 |
|
Cervical cancer biopsy R015
|
Cervical cancer biopsy
|
clinic: Case
sample id: R015
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953504
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953504/suppl/GSM953504_R015.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953505 | GPL201 |
|
Cervical cancer biopsy R035
|
Cervical cancer biopsy
|
clinic: Case
sample id: R035
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953505
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953505/suppl/GSM953505_R035.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953506 | GPL201 |
|
Cervical cancer biopsy R052
|
Cervical cancer biopsy
|
clinic: Case
sample id: R052
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953506
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953506/suppl/GSM953506_R052.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953507 | GPL201 |
|
Cervical cancer biopsy R057
|
Cervical cancer biopsy
|
clinic: Case
sample id: R057
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953507
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953507/suppl/GSM953507_R057.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953508 | GPL201 |
|
Cervical cancer biopsy R072
|
Cervical cancer biopsy
|
clinic: Case
sample id: R072
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953508
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953508/suppl/GSM953508_R072.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953509 | GPL201 |
|
Cervical cancer biopsy R093
|
Cervical cancer biopsy
|
clinic: Case
sample id: R093
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953509
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953509/suppl/GSM953509_R093.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953510 | GPL201 |
|
Cervical cancer biopsy R094
|
Cervical cancer biopsy
|
clinic: Case
sample id: R094
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953510
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953510/suppl/GSM953510_R094.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953511 | GPL201 |
|
Cervical cancer biopsy R124
|
Cervical cancer biopsy
|
clinic: Case
sample id: R124
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953511
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953511/suppl/GSM953511_R124.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953512 | GPL201 |
|
Cervical cancer biopsy R170
|
Cervical cancer biopsy
|
clinic: Case
sample id: R170
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953512
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953512/suppl/GSM953512_R170.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953513 | GPL201 |
|
Cervical cancer biopsy R183
|
Cervical cancer biopsy
|
clinic: Case
sample id: R183
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953513
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953513/suppl/GSM953513_R183.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953514 | GPL201 |
|
Cervical cancer biopsy R189
|
Cervical cancer biopsy
|
clinic: Case
sample id: R189
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953514
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953514/suppl/GSM953514_R189.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953515 | GPL201 |
|
Cervical cancer biopsy R221
|
Cervical cancer biopsy
|
clinic: Case
sample id: R221
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953515
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953515/suppl/GSM953515_R221.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953516 | GPL201 |
|
Cervical cancer biopsy R230
|
Cervical cancer biopsy
|
clinic: Case
sample id: R230
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953516
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953516/suppl/GSM953516_R230.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953517 | GPL201 |
|
Cervical cancer biopsy R232
|
Cervical cancer biopsy
|
clinic: Case
sample id: R232
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953517
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953517/suppl/GSM953517_R232.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953518 | GPL201 |
|
Cervical cancer biopsy R240
|
Cervical cancer biopsy
|
clinic: Case
sample id: R240
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953518
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953518/suppl/GSM953518_R240.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953519 | GPL201 |
|
Cervical cancer biopsy R245
|
Cervical cancer biopsy
|
clinic: Case
sample id: R245
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953519
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953519/suppl/GSM953519_R245.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953520 | GPL201 |
|
Cervical cancer biopsy R255
|
Cervical cancer biopsy
|
clinic: Case
sample id: R255
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953520
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953520/suppl/GSM953520_R255.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953521 | GPL201 |
|
Cervical cancer biopsy R258
|
Cervical cancer biopsy
|
clinic: Case
sample id: R258
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953521
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953521/suppl/GSM953521_R258.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953522 | GPL201 |
|
Cervical cancer biopsy R265
|
Cervical cancer biopsy
|
clinic: Case
sample id: R265
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953522
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953522/suppl/GSM953522_R265.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953523 | GPL201 |
|
Cervical cancer biopsy R284
|
Cervical cancer biopsy
|
clinic: Case
sample id: R284
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953523
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953523/suppl/GSM953523_R284.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953524 | GPL201 |
|
Cervical cancer biopsy R308
|
Cervical cancer biopsy
|
clinic: Case
sample id: R308
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953524
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953524/suppl/GSM953524_R308.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953525 | GPL201 |
|
Cervical cancer biopsy R312
|
Cervical cancer biopsy
|
clinic: Case
sample id: R312
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953525
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953525/suppl/GSM953525_R312.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953526 | GPL201 |
|
Cervical cancer biopsy R315
|
Cervical cancer biopsy
|
clinic: Case
sample id: R315
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953526
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953526/suppl/GSM953526_R315.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953527 | GPL201 |
|
Cervical cancer biopsy R324
|
Cervical cancer biopsy
|
clinic: Case
sample id: R324
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953527
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953527/suppl/GSM953527_R324.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953528 | GPL201 |
|
Cervical cancer biopsy R330
|
Cervical cancer biopsy
|
clinic: Case
sample id: R330
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953528
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953528/suppl/GSM953528_R330.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953529 | GPL201 |
|
Cervical cancer biopsy R333
|
Cervical cancer biopsy
|
clinic: Case
sample id: R333
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953529
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953529/suppl/GSM953529_R333.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953530 | GPL201 |
|
Cervical cancer biopsy R335
|
Cervical cancer biopsy
|
clinic: Case
sample id: R335
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953530
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953530/suppl/GSM953530_R335.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953531 | GPL201 |
|
Cervical cancer biopsy R336
|
Cervical cancer biopsy
|
clinic: Case
sample id: R336
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953531
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953531/suppl/GSM953531_R336.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953532 | GPL201 |
|
Cervical cancer biopsy R339
|
Cervical cancer biopsy
|
clinic: Case
sample id: R339
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953532
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953532/suppl/GSM953532_R339.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953533 | GPL201 |
|
Cervical cancer biopsy R359
|
Cervical cancer biopsy
|
clinic: Case
sample id: R359
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953533
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953533/suppl/GSM953533_R359.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953534 | GPL201 |
|
Cervical cancer biopsy R369
|
Cervical cancer biopsy
|
clinic: Case
sample id: R369
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953534
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953534/suppl/GSM953534_R369.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953535 | GPL201 |
|
Cervical cancer biopsy R378
|
Cervical cancer biopsy
|
clinic: Case
sample id: R378
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953535
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953535/suppl/GSM953535_R378.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953536 | GPL201 |
|
Cervical cancer biopsy R396
|
Cervical cancer biopsy
|
clinic: Case
sample id: R396
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953536
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953536/suppl/GSM953536_R396.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953537 | GPL201 |
|
Cervical cancer biopsy R403
|
Cervical cancer biopsy
|
clinic: Case
sample id: R403
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953537
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953537/suppl/GSM953537_R403.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953538 | GPL201 |
|
Cervical cancer biopsy R409
|
Cervical cancer biopsy
|
clinic: Case
sample id: R409
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953538
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953538/suppl/GSM953538_R409.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953539 | GPL201 |
|
Cervical cancer biopsy R411
|
Cervical cancer biopsy
|
clinic: Case
sample id: R411
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953539
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953539/suppl/GSM953539_R411.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953540 | GPL201 |
|
Cervical cancer biopsy R412
|
Cervical cancer biopsy
|
clinic: Case
sample id: R412
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953540
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953540/suppl/GSM953540_R412.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953541 | GPL201 |
|
Cervical cancer biopsy R415
|
Cervical cancer biopsy
|
clinic: Case
sample id: R415
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953541
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953541/suppl/GSM953541_R415.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953542 | GPL201 |
|
Cervical cancer biopsy R434
|
Cervical cancer biopsy
|
clinic: Case
sample id: R434
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953542
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953542/suppl/GSM953542_R434.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953543 | GPL201 |
|
Cervical cancer biopsy R441
|
Cervical cancer biopsy
|
clinic: Case
sample id: R441
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953543
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953543/suppl/GSM953543_R441.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953544 | GPL201 |
|
Cervical cancer biopsy R443
|
Cervical cancer biopsy
|
clinic: Case
sample id: R443
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953544
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953544/suppl/GSM953544_R443.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953545 | GPL201 |
|
Cervical cancer biopsy R446
|
Cervical cancer biopsy
|
clinic: Case
sample id: R446
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953545
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953545/suppl/GSM953545_R446.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
GSM953546 | GPL201 |
|
Cervical cancer biopsy R482
|
Cervical cancer biopsy
|
clinic: Case
sample id: R482
tissue: HPV16-positive cervical cancer specimen
|
|
| Sample_geo_accession | GSM953546
| | Sample_status | Public on Mar 31 2013
| | Sample_submission_date | Jun 28 2012
| | Sample_last_update_date | Mar 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 mg total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45°C and 60 rpm on Human Focus Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_001
| | Sample_scan_protocol | Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
| | Sample_data_processing | Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console.
| | Sample_platform_id | GPL201
| | Sample_contact_name | Ana María,,Espinosa
| | Sample_contact_email | anaesga@hotmail.com
| | Sample_contact_phone | +525527892000
| | Sample_contact_fax | +525527892000
| | Sample_contact_laboratory | U-311
| | Sample_contact_department | Unidad de Medicina Genómica
| | Sample_contact_institute | Hospital General de México O.D.
| | Sample_contact_address | Dr. Balmis No. 148
| | Sample_contact_city | Distrito Federal
| | Sample_contact_state | Cuauhtemoc
| | Sample_contact_zip/postal_code | 06726
| | Sample_contact_country | Mexico
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM953nnn/GSM953546/suppl/GSM953546_R482.CEL.gz
| | Sample_series_id | GSE39001
| | Sample_data_row_count | 8793
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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