Search results for the GEO ID: GSE39153  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM957080 | GPL1261 |
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IR NDN1
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Lin-Sca-1+c-Kit+ (LSK) cells from bone marrow
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strain: C57BL/6
tissue: bone marrow
cell type: Lin-Sca-1+c-Kit+ (LSK) cells
genotype: necdin null
treatment: sublethal dose of irradiation (6,5 Gy)
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Lin-Sca-1+c-Kit+ (LSK) cells from mice reconstituted with necdin null fetal liver cells 1 following a sublethal dose of irradiation (6,5 Gy)
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| Sample_geo_accession | GSM957080
| | Sample_status | Public on Sep 05 2012
| | Sample_submission_date | Jul 06 2012
| | Sample_last_update_date | Sep 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were sublethally irradiated at 6.5 Gy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by Rneasy Plus Mini Kit (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Addymetrix 3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jeffrey,,Zhao
| | Sample_contact_email | zhaoy@mskcc.org
| | Sample_contact_department | Genomics Core
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | RRL417A
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM957nnn/GSM957080/suppl/GSM957080_YL_IR_NDN1_Mouse430_2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM957nnn/GSM957080/suppl/GSM957080_YL_IR_NDN1_Mouse430_2_2.mas5.CHP.gz
| | Sample_series_id | GSE39153
| | Sample_data_row_count | 45101
| | |
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GSM957081 | GPL1261 |
|
IR NDN2
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Lin-Sca-1+c-Kit+ (LSK) cells from bone marrow
|
strain: C57BL/6
tissue: bone marrow
cell type: Lin-Sca-1+c-Kit+ (LSK) cells
genotype: necdin null
treatment: sublethal dose of irradiation (6,5 Gy)
|
Lin-Sca-1+c-Kit+ (LSK) cells from mice reconstituted with necdin null fetal liver cells 2 following a sublethal dose of irradiation (6,5 Gy)
|
| Sample_geo_accession | GSM957081
| | Sample_status | Public on Sep 05 2012
| | Sample_submission_date | Jul 06 2012
| | Sample_last_update_date | Sep 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were sublethally irradiated at 6.5 Gy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by Rneasy Plus Mini Kit (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Addymetrix 3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jeffrey,,Zhao
| | Sample_contact_email | zhaoy@mskcc.org
| | Sample_contact_department | Genomics Core
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | RRL417A
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM957nnn/GSM957081/suppl/GSM957081_YL_IR_NDN2_Mouse430_2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM957nnn/GSM957081/suppl/GSM957081_YL_IR_NDN2_Mouse430_2_2.mas5.CHP.gz
| | Sample_series_id | GSE39153
| | Sample_data_row_count | 45101
| | |
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GSM957082 | GPL1261 |
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IR WT1
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Lin-Sca-1+c-Kit+ (LSK) cells from bone marrow
|
strain: C57BL/6
tissue: bone marrow
cell type: Lin-Sca-1+c-Kit+ (LSK) cells
genotype: wild type
treatment: sublethal dose of irradiation (6,5 Gy)
|
Lin-Sca-1+c-Kit+ (LSK) cells from mice reconstituted with wild type fetal liver cells 1 following a sublethal dose of irradiation (6,5 Gy)
|
| Sample_geo_accession | GSM957082
| | Sample_status | Public on Sep 05 2012
| | Sample_submission_date | Jul 06 2012
| | Sample_last_update_date | Sep 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were sublethally irradiated at 6.5 Gy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by Rneasy Plus Mini Kit (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Addymetrix 3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jeffrey,,Zhao
| | Sample_contact_email | zhaoy@mskcc.org
| | Sample_contact_department | Genomics Core
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | RRL417A
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM957nnn/GSM957082/suppl/GSM957082_YL_IR_WT1_Mouse430_2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM957nnn/GSM957082/suppl/GSM957082_YL_IR_WT1_Mouse430_2_2.mas5.CHP.gz
| | Sample_series_id | GSE39153
| | Sample_data_row_count | 45101
| | |
|
GSM957083 | GPL1261 |
|
IR WT2
|
Lin-Sca-1+c-Kit+ (LSK) cells from bone marrow
|
strain: C57BL/6
tissue: bone marrow
cell type: Lin-Sca-1+c-Kit+ (LSK) cells
genotype: wild type
treatment: sublethal dose of irradiation (6,5 Gy)
|
Lin-Sca-1+c-Kit+ (LSK) cells from mice reconstituted with wild type fetal liver cells 2 following a sublethal dose of irradiation (6,5 Gy)
|
| Sample_geo_accession | GSM957083
| | Sample_status | Public on Sep 05 2012
| | Sample_submission_date | Jul 06 2012
| | Sample_last_update_date | Sep 05 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were sublethally irradiated at 6.5 Gy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed by Rneasy Plus Mini Kit (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Addymetrix 3000 7G Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jeffrey,,Zhao
| | Sample_contact_email | zhaoy@mskcc.org
| | Sample_contact_department | Genomics Core
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | RRL417A
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM957nnn/GSM957083/suppl/GSM957083_YL_IR_WT2_Mouse430_2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM957nnn/GSM957083/suppl/GSM957083_YL_IR_WT2_Mouse430_2_2.mas5.CHP.gz
| | Sample_series_id | GSE39153
| | Sample_data_row_count | 45101
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