Search results for the GEO ID: GSE39204  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM958059 | GPL570 |
|
KOVB2_102 rehyb
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 4
histology: clear
age: 68
|
|
| Sample_geo_accession | GSM958059
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958059/suppl/GSM958059_KOVB2_102_rehyb.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958060 | GPL570 |
|
KOVB2_104
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: clear
age: 44
|
|
| Sample_geo_accession | GSM958060
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958060/suppl/GSM958060_KOVB2_104.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958061 | GPL570 |
|
KOVB2_105
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 3b
histology: undifferentiated
age: 73
|
|
| Sample_geo_accession | GSM958061
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958061/suppl/GSM958061_KOVB2_105.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958062 | GPL570 |
|
KOVB2_107
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: clear
age: 53
|
|
| Sample_geo_accession | GSM958062
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958062/suppl/GSM958062_KOVB2_107.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958063 | GPL570 |
|
KOVB2_112
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: endometrioid
age: 54
|
|
| Sample_geo_accession | GSM958063
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958063/suppl/GSM958063_KOVB2_112.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958064 | GPL570 |
|
KOVB2_114
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 2a
histology: serous
age: 54
|
|
| Sample_geo_accession | GSM958064
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958064/suppl/GSM958064_KOVB2_114.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958065 | GPL570 |
|
KOVB2_91
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 3c
histology: serous/clear
age: 75
|
|
| Sample_geo_accession | GSM958065
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958065/suppl/GSM958065_KOVB2_91.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958066 | GPL570 |
|
KOVB2_94
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: mucinous
age: 47
|
|
| Sample_geo_accession | GSM958066
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958066/suppl/GSM958066_KOVB2_94.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958067 | GPL570 |
|
KOVB2_96
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: clear
age: 48
|
|
| Sample_geo_accession | GSM958067
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958067/suppl/GSM958067_KOVB2_96.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958068 | GPL570 |
|
KOVB3_116
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: clear
age: 45
|
|
| Sample_geo_accession | GSM958068
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958068/suppl/GSM958068_KOVB3_116.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958069 | GPL570 |
|
KOVB3_120
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: serous
age: 28
|
|
| Sample_geo_accession | GSM958069
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958069/suppl/GSM958069_KOVB3_120.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958070 | GPL570 |
|
KOVB3_122
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 2c
histology: clear
age: 46
|
|
| Sample_geo_accession | GSM958070
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958070/suppl/GSM958070_KOVB3_122.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958071 | GPL570 |
|
KOVB3_123
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 3c
histology: clear
age: 60
|
|
| Sample_geo_accession | GSM958071
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958071/suppl/GSM958071_KOVB3_123.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958072 | GPL570 |
|
KOVB3_124
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: endometrioid
age: 50
|
|
| Sample_geo_accession | GSM958072
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958072/suppl/GSM958072_KOVB3_124.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958073 | GPL570 |
|
KOVB3_125 rehyb
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: serous
age: 52
|
|
| Sample_geo_accession | GSM958073
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958073/suppl/GSM958073_KOVB3_125_rehyb.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958074 | GPL570 |
|
KOVB3_126
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: mucinous
age: 53
|
|
| Sample_geo_accession | GSM958074
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958074/suppl/GSM958074_KOVB3_126.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958075 | GPL570 |
|
KOVB3_135
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 3c
histology: serous
age: 61
|
|
| Sample_geo_accession | GSM958075
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958075/suppl/GSM958075_KOVB3_135.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958076 | GPL570 |
|
KOVB3_136
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: serous
age: 63
|
|
| Sample_geo_accession | GSM958076
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958076/suppl/GSM958076_KOVB3_136.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958077 | GPL570 |
|
KOVB3_142
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: carcinosarcoma
age: 45
|
|
| Sample_geo_accession | GSM958077
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958077/suppl/GSM958077_KOVB3_142.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958078 | GPL570 |
|
KOVB3_143
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: clear
age: 57
|
|
| Sample_geo_accession | GSM958078
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958078/suppl/GSM958078_KOVB3_143.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958079 | GPL570 |
|
KOVB3_154
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 3c
histology: serous
age: 45
|
|
| Sample_geo_accession | GSM958079
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958079/suppl/GSM958079_KOVB3_154.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958080 | GPL570 |
|
KOVB4_11
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: clear
age: 53
|
|
| Sample_geo_accession | GSM958080
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958080/suppl/GSM958080_KOVB4_11.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958081 | GPL570 |
|
KOVB4_15
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 3b
histology: serous
age: 57
|
|
| Sample_geo_accession | GSM958081
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958081/suppl/GSM958081_KOVB4_15.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958082 | GPL570 |
|
KOVB4_18
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 2c
histology: endometrioid
age: 46
|
|
| Sample_geo_accession | GSM958082
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958082/suppl/GSM958082_KOVB4_18.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958083 | GPL570 |
|
KOVB4_19
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: clear
age: 58
|
|
| Sample_geo_accession | GSM958083
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958083/suppl/GSM958083_KOVB4_19.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958084 | GPL570 |
|
KOVB4_20
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 2a
histology: clear
age: 61
|
|
| Sample_geo_accession | GSM958084
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958084/suppl/GSM958084_KOVB4_20.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958085 | GPL570 |
|
KOVB4_21
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 2c
histology: endometrioid
age: 48
|
|
| Sample_geo_accession | GSM958085
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958085/suppl/GSM958085_KOVB4_21.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958086 | GPL570 |
|
KOVB4_23
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: serous
age: 73
|
|
| Sample_geo_accession | GSM958086
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958086/suppl/GSM958086_KOVB4_23.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958087 | GPL570 |
|
KOVB4_24
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 3c
histology: serous
age: 74
|
|
| Sample_geo_accession | GSM958087
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958087/suppl/GSM958087_KOVB4_24.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958088 | GPL570 |
|
KOVB4_25
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: clear
age: 68
|
|
| Sample_geo_accession | GSM958088
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958088/suppl/GSM958088_KOVB4_25.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958089 | GPL570 |
|
KOVB4_27
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1a
histology: endometrioid
age: 44
|
|
| Sample_geo_accession | GSM958089
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958089/suppl/GSM958089_KOVB4_27.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958090 | GPL570 |
|
KOVB4_29
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 1c
histology: endometrioid
age: 52
|
|
| Sample_geo_accession | GSM958090
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958090/suppl/GSM958090_KOVB4_29.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958091 | GPL570 |
|
KOVB4_32
|
ovarian cancer, ascites0
|
tissue: ovarian cancer
ascites_cytology: negative
Stage: 2c
histology: endometrioid
age: 46
|
|
| Sample_geo_accession | GSM958091
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958091/suppl/GSM958091_KOVB4_32.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958092 | GPL570 |
|
KOVB2_100
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 1c
histology: endometrioid
age: 53
|
|
| Sample_geo_accession | GSM958092
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958092/suppl/GSM958092_KOVB2_100.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958093 | GPL570 |
|
KOVB2_106
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 35
|
|
| Sample_geo_accession | GSM958093
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958093/suppl/GSM958093_KOVB2_106.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958094 | GPL570 |
|
KOVB2_108
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 51
|
|
| Sample_geo_accession | GSM958094
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958094/suppl/GSM958094_KOVB2_108.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958095 | GPL570 |
|
KOVB2_111
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 55
|
|
| Sample_geo_accession | GSM958095
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958095/suppl/GSM958095_KOVB2_111.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958096 | GPL570 |
|
KOVB2_113
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: clear
age: 44
|
|
| Sample_geo_accession | GSM958096
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958096/suppl/GSM958096_KOVB2_113.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958097 | GPL570 |
|
KOVB2_85
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 66
|
|
| Sample_geo_accession | GSM958097
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958097/suppl/GSM958097_KOVB2_85.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958098 | GPL570 |
|
KOVB2_86
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 4
histology: serous
age: 49
|
|
| Sample_geo_accession | GSM958098
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958098/suppl/GSM958098_KOVB2_86.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958099 | GPL570 |
|
KOVB2_87
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 1c
histology: clear
age: 45
|
|
| Sample_geo_accession | GSM958099
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958099/suppl/GSM958099_KOVB2_87.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958100 | GPL570 |
|
KOVB2_88
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: undifferentiated
age: 58
|
|
| Sample_geo_accession | GSM958100
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958100/suppl/GSM958100_KOVB2_88.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958101 | GPL570 |
|
KOVB2_89
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 47
|
|
| Sample_geo_accession | GSM958101
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958101/suppl/GSM958101_KOVB2_89.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958102 | GPL570 |
|
KOVB2_92
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 1c
histology: endometrioid
age: 64
|
|
| Sample_geo_accession | GSM958102
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958102/suppl/GSM958102_KOVB2_92.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958103 | GPL570 |
|
KOVB2_95
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3b
histology: endometrioid
age: 50
|
|
| Sample_geo_accession | GSM958103
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958103/suppl/GSM958103_KOVB2_95.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958104 | GPL570 |
|
KOVB2_98
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: endometrioid
age: 55
|
|
| Sample_geo_accession | GSM958104
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958104/suppl/GSM958104_KOVB2_98.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958105 | GPL570 |
|
KOVB3_115
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 42
|
|
| Sample_geo_accession | GSM958105
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958105/suppl/GSM958105_KOVB3_115.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958106 | GPL570 |
|
KOVB3_121
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 64
|
|
| Sample_geo_accession | GSM958106
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958106/suppl/GSM958106_KOVB3_121.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958107 | GPL570 |
|
KOVB3_128
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 2c
histology: serous
age: 54
|
|
| Sample_geo_accession | GSM958107
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958107/suppl/GSM958107_KOVB3_128.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958108 | GPL570 |
|
KOVB3_130
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 72
|
|
| Sample_geo_accession | GSM958108
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958108/suppl/GSM958108_KOVB3_130.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958109 | GPL570 |
|
KOVB3_131
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 35
|
|
| Sample_geo_accession | GSM958109
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958109/suppl/GSM958109_KOVB3_131.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958110 | GPL570 |
|
KOVB3_132
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3b
histology: serous
age: 49
|
|
| Sample_geo_accession | GSM958110
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958110/suppl/GSM958110_KOVB3_132.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958111 | GPL570 |
|
KOVB3_133
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 40
|
|
| Sample_geo_accession | GSM958111
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958111/suppl/GSM958111_KOVB3_133.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958112 | GPL570 |
|
KOVB3_134
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3b
histology: endometrioid
age: 55
|
|
| Sample_geo_accession | GSM958112
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958112/suppl/GSM958112_KOVB3_134.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958113 | GPL570 |
|
KOVB3_138
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 48
|
|
| Sample_geo_accession | GSM958113
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958113/suppl/GSM958113_KOVB3_138.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958114 | GPL570 |
|
KOVB3_139
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 4
histology: clear
age: 32
|
|
| Sample_geo_accession | GSM958114
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958114/suppl/GSM958114_KOVB3_139.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958115 | GPL570 |
|
KOVB3_140
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 81
|
|
| Sample_geo_accession | GSM958115
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958115/suppl/GSM958115_KOVB3_140.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958116 | GPL570 |
|
KOVB3_144
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3b
histology: serous low grade
age: 50
|
|
| Sample_geo_accession | GSM958116
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958116/suppl/GSM958116_KOVB3_144.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958117 | GPL570 |
|
KOVB4_13
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 4
histology: serous
age: 65
|
|
| Sample_geo_accession | GSM958117
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958117/suppl/GSM958117_KOVB4_13.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958118 | GPL570 |
|
KOVB4_2
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 56
|
|
| Sample_geo_accession | GSM958118
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958118/suppl/GSM958118_KOVB4_2.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958119 | GPL570 |
|
KOVB4_22
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 1c
histology: serous
age: 59
|
|
| Sample_geo_accession | GSM958119
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958119/suppl/GSM958119_KOVB4_22.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958120 | GPL570 |
|
KOVB4_3
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 4
histology: clear
age: 46
|
|
| Sample_geo_accession | GSM958120
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958120/suppl/GSM958120_KOVB4_3.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958121 | GPL570 |
|
KOVB4_33
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 4
histology: endometrioid
age: 57
|
|
| Sample_geo_accession | GSM958121
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958121/suppl/GSM958121_KOVB4_33.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
GSM958122 | GPL570 |
|
KOVB4_4
|
ovarian cancer, ascites1
|
tissue: ovarian cancer
ascites_cytology: positive
Stage: 3c
histology: serous
age: 51
|
|
| Sample_geo_accession | GSM958122
| | Sample_status | Public on Jul 10 2012
| | Sample_submission_date | Jul 09 2012
| | Sample_last_update_date | Jul 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNA easy.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed according to Affymetrix GeneChip 3' IVT Express Kit protocol.
| | Sample_hyb_protocol | Following fragmentation, 12.5ug of cRNA were hybridized for 16hr at 45C on Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were analyzed with Affymetrix microarray scanner using AGCC software.
| | Sample_data_processing | The data were analyzed with R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kaoru,,Abiko
| | Sample_contact_email | kaoruvc@kuhp.kyoto-u.ac.jp
| | Sample_contact_department | Department of Gynecology and Obstetrics
| | Sample_contact_institute | Kyoto University Graduate School of Medicine
| | Sample_contact_address | 54 Shogoin Kawaharacho, Sakyo-ku
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958122/suppl/GSM958122_KOVB4_4.CEL.gz
| | Sample_series_id | GSE39204
| | Sample_data_row_count | 54636
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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