Search results for the GEO ID: GSE3926  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM89659 | GPL96 |
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181_par (HG-U133A)
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cancer cell line
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pancreatic
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untreated parental cancer cell line
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| Sample_geo_accession | GSM89659
| | Sample_status | Public on Apr 15 2010
| | Sample_submission_date | Dec 28 2005
| | Sample_last_update_date | May 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | standard Affymetrix procedure
| | Sample_label_protocol_ch1 | standard Affymetrix procedure
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_data_processing | The raw data files that are labeled as '.txt' files cannot be read by Affymetrix sotware. However, they can be loaded, normalized, processed and exported by dChip (http://biosun1.harvard.edu/complab/dchip/). The most current version of dChip can be directly downloaded using following link: http://www.biostat.harvard.edu/~cli/dchip_2010_01.exe
| | Sample_platform_id | GPL96
| | Sample_contact_name | Balazs,,Györffy
| | Sample_contact_email | zsalab2@yahoo.com
| | Sample_contact_institute | Hungarian Academy of Sciences
| | Sample_contact_address | Bókay 53
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | H1083
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM89nnn/GSM89659/suppl/GSM89659.cel.gz
| | Sample_series_id | GSE3926
| | Sample_series_id | GSE3929
| | Sample_data_row_count | 22283
| | |
|
GSM89662 | GPL96 |
|
257_par (HG-U133A)
|
cancer cell line
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gastric
|
untreated parental cancer cell line
|
| Sample_geo_accession | GSM89662
| | Sample_status | Public on Apr 15 2010
| | Sample_submission_date | Dec 28 2005
| | Sample_last_update_date | May 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | standard Affymetrix procedure
| | Sample_label_protocol_ch1 | standard Affymetrix procedure
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_data_processing | The raw data files that are labeled as '.txt' files cannot be read by Affymetrix sotware. However, they can be loaded, normalized, processed and exported by dChip (http://biosun1.harvard.edu/complab/dchip/). The most current version of dChip can be directly downloaded using following link: http://www.biostat.harvard.edu/~cli/dchip_2010_01.exe
| | Sample_platform_id | GPL96
| | Sample_contact_name | Balazs,,Györffy
| | Sample_contact_email | zsalab2@yahoo.com
| | Sample_contact_institute | Hungarian Academy of Sciences
| | Sample_contact_address | Bókay 53
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | H1083
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM89nnn/GSM89662/suppl/GSM89662.cel.gz
| | Sample_series_id | GSE3926
| | Sample_series_id | GSE3929
| | Sample_data_row_count | 22283
| | |
|
GSM89665 | GPL96 |
|
HT29_par (HG-U133A)
|
cancer cell line
|
colon
|
untreated parental cancer cell line
|
| Sample_geo_accession | GSM89665
| | Sample_status | Public on Apr 15 2010
| | Sample_submission_date | Dec 28 2005
| | Sample_last_update_date | May 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | standard Affymetrix procedure
| | Sample_label_protocol_ch1 | standard Affymetrix procedure
| | Sample_hyb_protocol | standard Affymetrix procedure
| | Sample_scan_protocol | standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0
| | Sample_data_processing | The raw data files that are labeled as '.txt' files cannot be read by Affymetrix sotware. However, they can be loaded, normalized, processed and exported by dChip (http://biosun1.harvard.edu/complab/dchip/). The most current version of dChip can be directly downloaded using following link: http://www.biostat.harvard.edu/~cli/dchip_2010_01.exe
| | Sample_platform_id | GPL96
| | Sample_contact_name | Balazs,,Györffy
| | Sample_contact_email | zsalab2@yahoo.com
| | Sample_contact_institute | Hungarian Academy of Sciences
| | Sample_contact_address | Bókay 53
| | Sample_contact_city | Budapest
| | Sample_contact_zip/postal_code | H1083
| | Sample_contact_country | Hungary
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM89nnn/GSM89665/suppl/GSM89665.cel.gz
| | Sample_series_id | GSE3926
| | Sample_series_id | GSE3929
| | Sample_data_row_count | 22283
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| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
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Regulation type |
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Fold change |
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B. Absolute calls (Transcribed/Not-detected) |
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Within groups |
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Detection status |
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Percentage detection |
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Across groups |
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Detection status |
First group: |
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Second group:
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Percentage detection |
First group: |
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Second group:
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