Search results for the GEO ID: GSE39273  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM959587 | GPL1261 |
|
ctrl.1
|
Colon cancer tumor (control)
|
gender: male
strain: CBA/C57BL/6
genotype/variation: wild type
tissue: colon cancer tumor
|
|
| Sample_geo_accession | GSM959587
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jul 11 2012
| | Sample_last_update_date | Jan 11 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were maintained at all times on a 12-hour light-dark cycle in a specific pathogen-free environment with free access to rodent chow and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 12 μg of RNA dissolved in 300 μL of buffer was hybridized to Mouse Genome 430. 2.0 GeneChips (Affymetrix). All samples were prepared with the standard protocol recommended by the manufacturer.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix Scanner 3000-7G scanner with GCOS software. Scanning was peformed according to the protocol described in the Affymetrix GeneChip® Expression Analysis Technical Manual, November 2004 Edition.
| | Sample_data_processing | Data was normalized using the GCRMA algorithm as implemented in Bioconductor/R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,Cragin,Wang
| | Sample_contact_email | tcw21@columbia.edu
| | Sample_contact_laboratory | Wang Lab
| | Sample_contact_department | Medicine- Digestive and Liver Diseases
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Av
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM959nnn/GSM959587/suppl/GSM959587_238ctrl.CEL.gz
| | Sample_series_id | GSE39273
| | Sample_data_row_count | 45101
| | |
|
GSM959588 | GPL1261 |
|
ctrl.2
|
Colon cancer tumor (control)
|
gender: male
strain: CBA/C57BL/6
genotype/variation: wild type
tissue: colon cancer tumor
|
|
| Sample_geo_accession | GSM959588
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jul 11 2012
| | Sample_last_update_date | Jan 11 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were maintained at all times on a 12-hour light-dark cycle in a specific pathogen-free environment with free access to rodent chow and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 12 μg of RNA dissolved in 300 μL of buffer was hybridized to Mouse Genome 430. 2.0 GeneChips (Affymetrix). All samples were prepared with the standard protocol recommended by the manufacturer.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix Scanner 3000-7G scanner with GCOS software. Scanning was peformed according to the protocol described in the Affymetrix GeneChip® Expression Analysis Technical Manual, November 2004 Edition.
| | Sample_data_processing | Data was normalized using the GCRMA algorithm as implemented in Bioconductor/R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,Cragin,Wang
| | Sample_contact_email | tcw21@columbia.edu
| | Sample_contact_laboratory | Wang Lab
| | Sample_contact_department | Medicine- Digestive and Liver Diseases
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Av
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM959nnn/GSM959588/suppl/GSM959588_241ctrl.CEL.gz
| | Sample_series_id | GSE39273
| | Sample_data_row_count | 45101
| | |
|
GSM959589 | GPL1261 |
|
ctrl.3
|
Colon cancer tumor (control)
|
gender: male
strain: CBA/C57BL/6
genotype/variation: wild type
tissue: colon cancer tumor
|
|
| Sample_geo_accession | GSM959589
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jul 11 2012
| | Sample_last_update_date | Jan 11 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were maintained at all times on a 12-hour light-dark cycle in a specific pathogen-free environment with free access to rodent chow and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 12 μg of RNA dissolved in 300 μL of buffer was hybridized to Mouse Genome 430. 2.0 GeneChips (Affymetrix). All samples were prepared with the standard protocol recommended by the manufacturer.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix Scanner 3000-7G scanner with GCOS software. Scanning was peformed according to the protocol described in the Affymetrix GeneChip® Expression Analysis Technical Manual, November 2004 Edition.
| | Sample_data_processing | Data was normalized using the GCRMA algorithm as implemented in Bioconductor/R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,Cragin,Wang
| | Sample_contact_email | tcw21@columbia.edu
| | Sample_contact_laboratory | Wang Lab
| | Sample_contact_department | Medicine- Digestive and Liver Diseases
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Av
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM959nnn/GSM959589/suppl/GSM959589_242ctrl.CEL.gz
| | Sample_series_id | GSE39273
| | Sample_data_row_count | 45101
| | |
|
GSM959590 | GPL1261 |
|
IL8.1
|
IL8 human transgenic mouse colon cancer tumor (control)
|
gender: male
strain: CBA/C57BL/6
genotype/variation: IL8 transgenic
tissue: colon cancer tumor
|
|
| Sample_geo_accession | GSM959590
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jul 11 2012
| | Sample_last_update_date | Jan 11 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were maintained at all times on a 12-hour light-dark cycle in a specific pathogen-free environment with free access to rodent chow and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 12 μg of RNA dissolved in 300 μL of buffer was hybridized to Mouse Genome 430. 2.0 GeneChips (Affymetrix). All samples were prepared with the standard protocol recommended by the manufacturer.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix Scanner 3000-7G scanner with GCOS software. Scanning was peformed according to the protocol described in the Affymetrix GeneChip® Expression Analysis Technical Manual, November 2004 Edition.
| | Sample_data_processing | Data was normalized using the GCRMA algorithm as implemented in Bioconductor/R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,Cragin,Wang
| | Sample_contact_email | tcw21@columbia.edu
| | Sample_contact_laboratory | Wang Lab
| | Sample_contact_department | Medicine- Digestive and Liver Diseases
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Av
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM959nnn/GSM959590/suppl/GSM959590_258-2.CEL.gz
| | Sample_series_id | GSE39273
| | Sample_data_row_count | 45101
| | |
|
GSM959591 | GPL1261 |
|
IL8.2
|
IL8 human transgenic mouse colon cancer tumor (control)
|
gender: male
strain: CBA/C57BL/6
genotype/variation: IL8 transgenic
tissue: colon cancer tumor
|
|
| Sample_geo_accession | GSM959591
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jul 11 2012
| | Sample_last_update_date | Jan 11 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were maintained at all times on a 12-hour light-dark cycle in a specific pathogen-free environment with free access to rodent chow and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 12 μg of RNA dissolved in 300 μL of buffer was hybridized to Mouse Genome 430. 2.0 GeneChips (Affymetrix). All samples were prepared with the standard protocol recommended by the manufacturer.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix Scanner 3000-7G scanner with GCOS software. Scanning was peformed according to the protocol described in the Affymetrix GeneChip® Expression Analysis Technical Manual, November 2004 Edition.
| | Sample_data_processing | Data was normalized using the GCRMA algorithm as implemented in Bioconductor/R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,Cragin,Wang
| | Sample_contact_email | tcw21@columbia.edu
| | Sample_contact_laboratory | Wang Lab
| | Sample_contact_department | Medicine- Digestive and Liver Diseases
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Av
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM959nnn/GSM959591/suppl/GSM959591_259-2.CEL.gz
| | Sample_series_id | GSE39273
| | Sample_data_row_count | 45101
| | |
|
GSM959592 | GPL1261 |
|
IL8.3
|
IL8 human transgenic mouse colon cancer tumor (control)
|
gender: male
strain: CBA/C57BL/6
genotype/variation: IL8 transgenic
tissue: colon cancer tumor
|
|
| Sample_geo_accession | GSM959592
| | Sample_status | Public on Jan 11 2013
| | Sample_submission_date | Jul 11 2012
| | Sample_last_update_date | Jan 11 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were maintained at all times on a 12-hour light-dark cycle in a specific pathogen-free environment with free access to rodent chow and water.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | 12 μg of RNA dissolved in 300 μL of buffer was hybridized to Mouse Genome 430. 2.0 GeneChips (Affymetrix). All samples were prepared with the standard protocol recommended by the manufacturer.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix Scanner 3000-7G scanner with GCOS software. Scanning was peformed according to the protocol described in the Affymetrix GeneChip® Expression Analysis Technical Manual, November 2004 Edition.
| | Sample_data_processing | Data was normalized using the GCRMA algorithm as implemented in Bioconductor/R.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Timothy,Cragin,Wang
| | Sample_contact_email | tcw21@columbia.edu
| | Sample_contact_laboratory | Wang Lab
| | Sample_contact_department | Medicine- Digestive and Liver Diseases
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Av
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM959nnn/GSM959592/suppl/GSM959592_261-2.CEL.gz
| | Sample_series_id | GSE39273
| | Sample_data_row_count | 45101
| | |
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