Search results for the GEO ID: GSE39354  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM966522 | GPL570 |
|
VCaP-siControl-EtOH-A
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
VCaP cells transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966522
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966522/suppl/GSM966522_VCaP-siControl-EtOH-A.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966523 | GPL570 |
|
VCaP-siControl-EtOH-B
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
VCaP cells transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966523
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966523/suppl/GSM966523_VCaP-siControl-EtOH-B.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966524 | GPL570 |
|
VCaP-siControl-EtOH-C
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
VCaP cells transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966524
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966524/suppl/GSM966524_VCaP-siControl-EtOH-C.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966525 | GPL570 |
|
VCaP-siERG-EtOH-A
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
VCaP cells transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966525
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966525/suppl/GSM966525_VCaP-siERG-EtOH-A.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966526 | GPL570 |
|
VCaP-siERG-EtOH-B
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
VCaP cells transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966526
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966526/suppl/GSM966526_VCaP-siERG-EtOH-B.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966527 | GPL570 |
|
VCaP-siERG-EtOH-C
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
VCaP cells transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966527
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966527/suppl/GSM966527_VCaP-siERG-EtOH-C.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966528 | GPL570 |
|
VCaP-siControl-DHT-A
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
VCaP cells transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966528
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966528/suppl/GSM966528_VCaP-siControl-DHT-A.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966529 | GPL570 |
|
VCaP-siControl-DHT-B
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
VCaP cells transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966529
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966529/suppl/GSM966529_VCaP-siControl-DHT-B.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966530 | GPL570 |
|
VCaP-siControl-DHT-C
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
VCaP cells transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966530
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966530/suppl/GSM966530_VCaP-siControl-DHT-C.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966532 | GPL570 |
|
VCaP-siERG-DHT-B
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
VCaP cells transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966532
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966532/suppl/GSM966532_VCaP-siERG-DHT-B.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966533 | GPL570 |
|
VCaP-siERG-DHT-C
|
VCaP cells
|
cell line: VCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
VCaP cells transfected with siERG were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966533
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966533/suppl/GSM966533_VCaP-siERG-DHT-C.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966534 | GPL570 |
|
LNCaP-shControl-EtOH-A
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
LNCaP cells transfected with shControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966534
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966534/suppl/GSM966534_LNCaP-shControl-EtOH-A.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966535 | GPL570 |
|
LNCaP-shControl-EtOH-B
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
LNCaP cells transfected with shControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966535
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966535/suppl/GSM966535_LNCaP-shControl-EtOH-B.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966536 | GPL570 |
|
LNCaP-shControl-EtOH-C
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
LNCaP cells transfected with shControl were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966536
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966536/suppl/GSM966536_LNCaP-shControl-EtOH-C.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966537 | GPL570 |
|
LNCaP-shETV1-EtOH-A
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
LNCaP cells transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966537
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966537/suppl/GSM966537_LNCaP-shETV1-EtOH-A.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966538 | GPL570 |
|
LNCaP-shETV1-EtOH-B
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
LNCaP cells transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966538
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966538/suppl/GSM966538_LNCaP-shETV1-EtOH-B.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966539 | GPL570 |
|
LNCaP-shETV1-EtOH-C
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of EtOH
|
LNCaP cells transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of EtOH (vehicle)
|
| Sample_geo_accession | GSM966539
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966539/suppl/GSM966539_LNCaP-shETV1-EtOH-C.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966540 | GPL570 |
|
LNCaP-shControl-DHT-A
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
LNCaP cells transfected with shControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966540
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966540/suppl/GSM966540_LNCaP-shControl-DHT-A.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966541 | GPL570 |
|
LNCaP-shControl-DHT-B
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
LNCaP cells transfected with shControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966541
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966541/suppl/GSM966541_LNCaP-shControl-DHT-B.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966542 | GPL570 |
|
LNCaP-shControl-DHT-C
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with siControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
LNCaP cells transfected with shControl were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966542
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966542/suppl/GSM966542_LNCaP-shControl-DHT-C.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966543 | GPL570 |
|
LNCaP-shETV1-DHT-A
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
LNCaP cells transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966543
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966543/suppl/GSM966543_LNCaP-shETV1-DHT-A.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966544 | GPL570 |
|
LNCaP-shETV1-DHT-B
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
LNCaP cells transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966544
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966544/suppl/GSM966544_LNCaP-shETV1-DHT-B.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
GSM966545 | GPL570 |
|
LNCaP-shETV1-DHT-C
|
LNCaP cells
|
cell line: LNCaP
tissue: prostate
tumor stage: androgen-dependent cancer cell
treatment: transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
LNCaP cells transfected with shETV1 were grown in androgen deprived serum for 2 days and then in the presence of 10nM DHT
|
| Sample_geo_accession | GSM966545
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | VCaP or LNCao cells were transfected with siRNA or shRNA, and then grown in hormone deprived conditions for 2 days, and then in the presence of EtOH or 10nM DHT.
| | Sample_growth_protocol_ch1 | Normal growth conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966545/suppl/GSM966545_LNCaP-shETV1-DHT-C.CEL.gz
| | Sample_series_id | GSE39354
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
