Search results for the GEO ID: GSE39355  |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM966546 | GPL1261 |
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WT-Luminal cells-A
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Primary prostate cells
|
cell type: prostate luminal cells
genotype/variation: wild type
|
Prostate cells FACS-sorted, luminal cells (Lin-Sca1-CD49f+) population
|
| Sample_geo_accession | GSM966546
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Prostate single cells were isolated from the prostate, and stained for FACS sorting. Sorted cells were resuspended in Trizol for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed following the manufacturer's protocol, followed by NuGEN V2cDNA amplification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinulated cRNA were prepared according to the NuGEN protocol for Affumetrix arrays.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966546/suppl/GSM966546_WT-LUM-A.CEL.gz
| | Sample_series_id | GSE39355
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 45037
| | |
|
GSM966547 | GPL1261 |
|
WT-Luminal cells-B
|
Primary prostate cells
|
cell type: prostate luminal cells
genotype/variation: wild type
|
Prostate cells FACS-sorted, luminal cells (Lin-Sca1-CD49f+) population
|
| Sample_geo_accession | GSM966547
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Prostate single cells were isolated from the prostate, and stained for FACS sorting. Sorted cells were resuspended in Trizol for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed following the manufacturer's protocol, followed by NuGEN V2cDNA amplification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinulated cRNA were prepared according to the NuGEN protocol for Affumetrix arrays.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966547/suppl/GSM966547_WT-LUM-B.CEL.gz
| | Sample_series_id | GSE39355
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 45037
| | |
|
GSM966548 | GPL1261 |
|
WT-Luminal cells-C
|
Primary prostate cells
|
cell type: prostate luminal cells
genotype/variation: wild type
|
Prostate cells FACS-sorted, luminal cells (Lin-Sca1-CD49f+) population
|
| Sample_geo_accession | GSM966548
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Prostate single cells were isolated from the prostate, and stained for FACS sorting. Sorted cells were resuspended in Trizol for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed following the manufacturer's protocol, followed by NuGEN V2cDNA amplification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinulated cRNA were prepared according to the NuGEN protocol for Affumetrix arrays.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966548/suppl/GSM966548_WT-LUM-C.CEL.gz
| | Sample_series_id | GSE39355
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 45037
| | |
|
GSM966549 | GPL1261 |
|
T-ETV1_Luminal cells-A
|
Primary prostate cells
|
cell type: prostate luminal cells
genotype/variation: T-ETV1
|
Prostate cells FACS-sorted, GFP+ luminal cells (Lin-Sca1-CD49f+) population
|
| Sample_geo_accession | GSM966549
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Prostate single cells were isolated from the prostate, and stained for FACS sorting. Sorted cells were resuspended in Trizol for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed following the manufacturer's protocol, followed by NuGEN V2cDNA amplification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinulated cRNA were prepared according to the NuGEN protocol for Affumetrix arrays.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966549/suppl/GSM966549_T-ETV1_LUM-A.CEL.gz
| | Sample_series_id | GSE39355
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 45037
| | |
|
GSM966550 | GPL1261 |
|
T-ETV1_Luminal cells-B
|
Primary prostate cells
|
cell type: prostate luminal cells
genotype/variation: T-ETV1
|
Prostate cells FACS-sorted, GFP+ luminal cells (Lin-Sca1-CD49f+) population
|
| Sample_geo_accession | GSM966550
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Prostate single cells were isolated from the prostate, and stained for FACS sorting. Sorted cells were resuspended in Trizol for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed following the manufacturer's protocol, followed by NuGEN V2cDNA amplification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinulated cRNA were prepared according to the NuGEN protocol for Affumetrix arrays.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966550/suppl/GSM966550_T-ETV1_LUM-B.CEL.gz
| | Sample_series_id | GSE39355
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 45037
| | |
|
GSM966551 | GPL1261 |
|
T-ETV1_Luminal cells-C
|
Primary prostate cells
|
cell type: prostate luminal cells
genotype/variation: T-ETV1
|
Prostate cells FACS-sorted, GFP+ luminal cells (Lin-Sca1-CD49f+) population
|
| Sample_geo_accession | GSM966551
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Prostate single cells were isolated from the prostate, and stained for FACS sorting. Sorted cells were resuspended in Trizol for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed following the manufacturer's protocol, followed by NuGEN V2cDNA amplification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinulated cRNA were prepared according to the NuGEN protocol for Affumetrix arrays.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966551/suppl/GSM966551_T-ETV1_LUM-C.CEL.gz
| | Sample_series_id | GSE39355
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 45037
| | |
|
GSM966552 | GPL1261 |
|
T-ETV1_Luminal cells-D
|
Primary prostate cells
|
cell type: prostate luminal cells
genotype/variation: T-ETV1
|
Prostate cells FACS-sorted, GFP+ luminal cells (Lin-Sca1-CD49f+) population
|
| Sample_geo_accession | GSM966552
| | Sample_status | Public on Mar 01 2013
| | Sample_submission_date | Jul 13 2012
| | Sample_last_update_date | Mar 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Prostate single cells were isolated from the prostate, and stained for FACS sorting. Sorted cells were resuspended in Trizol for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed following the manufacturer's protocol, followed by NuGEN V2cDNA amplification
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinulated cRNA were prepared according to the NuGEN protocol for Affumetrix arrays.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed by dchip and arrays were normalized against the baseline array that has the median brightness.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Esther,,Baena
| | Sample_contact_email | ebaena@bloodgroup.tch.harvard.edu
| | Sample_contact_phone | 617 9192054
| | Sample_contact_fax | 617 730 0222
| | Sample_contact_laboratory | Stuart H. Orkin
| | Sample_contact_department | Hematology/Oncology
| | Sample_contact_institute | Childrens Hospital Boston
| | Sample_contact_address | 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM966nnn/GSM966552/suppl/GSM966552_T-ETV1_LUM-D.CEL.gz
| | Sample_series_id | GSE39355
| | Sample_series_id | GSE39388
| | Sample_data_row_count | 45037
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