Search results for the GEO ID: GSE39395  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM967315 | GPL570 |
|
Epcam(+), CD45(-) patient I
|
patient I
|
marker: Epcam(+),CD45(-)
disease state: human CRC
cell type: epithelial cells
individual: patient I
|
expression data from epithelial cells
|
| Sample_geo_accession | GSM967315
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967315/suppl/GSM967315_ACDec08--113-Epcam-I.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967316 | GPL570 |
|
Epcam(-), CD45(+) patient I
|
patient I
|
marker: Epcam(-),CD45(+)
disease state: human CRC
cell type: leukocytes
individual: patient I
|
expression data from leukocytes
|
| Sample_geo_accession | GSM967316
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967316/suppl/GSM967316_ACDec08--114-CD45-I.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967317 | GPL570 |
|
Epcam(-), CD45(-) patient I
|
patient I
|
marker: Epcam(-),CD45(-)
disease state: human CRC
cell type: stromal cells
individual: patient I
|
expression data from stromal cells
|
| Sample_geo_accession | GSM967317
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967317/suppl/GSM967317_ACDec08--115-R-I.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967318 | GPL570 |
|
Epcam(+), CD45(-) patient II
|
patient II
|
marker: Epcam(+),CD45(-)
disease state: human CRC
cell type: epithelial cells
individual: patient II
|
expression data from epithelial cells
|
| Sample_geo_accession | GSM967318
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967318/suppl/GSM967318_ACDec08--125-Epcam-II.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967319 | GPL570 |
|
Epcam(-), CD45(+) patient II
|
patient II
|
marker: Epcam(-),CD45(+)
disease state: human CRC
cell type: leukocytes
individual: patient II
|
expression data from leukocytes
|
| Sample_geo_accession | GSM967319
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967319/suppl/GSM967319_ACDec08--126-CD45-II.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967320 | GPL570 |
|
Epcam(-), CD45(-) patient II
|
patient II
|
marker: Epcam(-),CD45(-)
disease state: human CRC
cell type: stromal cells
individual: patient II
|
expression data from stromal cells
|
| Sample_geo_accession | GSM967320
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967320/suppl/GSM967320_ACDec08--127-R-II.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967321 | GPL570 |
|
Epcam(+), CD45(-) patient III
|
patient III
|
marker: Epcam(+),CD45(-)
disease state: human CRC
cell type: epithelial cells
individual: patient III
|
expression data from epithelial cells
|
| Sample_geo_accession | GSM967321
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967321/suppl/GSM967321_ACDec08--134-Epcam-III.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967322 | GPL570 |
|
Epcam(-), CD45(+) patient III
|
patient III
|
marker: Epcam(-),CD45(+)
disease state: human CRC
cell type: leukocytes
individual: patient III
|
expression data from leukocytes
|
| Sample_geo_accession | GSM967322
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967322/suppl/GSM967322_ACDec08--135-CD45-III.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967323 | GPL570 |
|
Epcam(-), CD45(-) patient III
|
patient III
|
marker: Epcam(-),CD45(-)
disease state: human CRC
cell type: stromal cells
individual: patient III
|
expression data from stromal cells
|
| Sample_geo_accession | GSM967323
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967323/suppl/GSM967323_ACDec08--136-R-III.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967324 | GPL570 |
|
Epcam(-), CD45(-) patient IV
|
patient IV
|
marker: Epcam(-),CD45(-)
disease state: human CRC
cell type: stromal cells
individual: patient IV
|
expression data from stromal cells
|
| Sample_geo_accession | GSM967324
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967324/suppl/GSM967324_ACJan09--23-R-IV.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967325 | GPL570 |
|
Epcam(+), CD45(-) patient IV
|
patient IV
|
marker: Epcam(+),CD45(-)
disease state: human CRC
cell type: epithelial cells
individual: patient IV
|
expression data from epithelial cells
|
| Sample_geo_accession | GSM967325
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967325/suppl/GSM967325_ACJan09--24-Epcam-IV.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967326 | GPL570 |
|
Epcam(-), CD45(+) patient IV
|
patient IV
|
marker: Epcam(-),CD45(+)
disease state: human CRC
cell type: leukocytes
individual: patient IV
|
expression data from leukocytes
|
| Sample_geo_accession | GSM967326
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967326/suppl/GSM967326_ACJan09--25-CD45-IV.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967327 | GPL570 |
|
Epcam(-), CD45(-) patient V
|
patient V
|
marker: Epcam(-),CD45(-)
disease state: human CRC
cell type: stromal cells
individual: patient V
|
expression data from stromal cells
|
| Sample_geo_accession | GSM967327
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967327/suppl/GSM967327_ACJan09--26-R-V.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967328 | GPL570 |
|
Epcam(+), CD45(-) patient V
|
patient V
|
marker: Epcam(+),CD45(-)
disease state: human CRC
cell type: epithelial cells
individual: patient V
|
expression data from epithelial cells
|
| Sample_geo_accession | GSM967328
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967328/suppl/GSM967328_ACJan09--27-Epcam-V.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967329 | GPL570 |
|
Epcam(-), CD45(+) patient V
|
patient V
|
marker: Epcam(-),CD45(+)
disease state: human CRC
cell type: leukocytes
individual: patient V
|
expression data from leukocytes
|
| Sample_geo_accession | GSM967329
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967329/suppl/GSM967329_ACJan09--28-CD45-V.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967330 | GPL570 |
|
Epcam(+), CD45(-) patient VI
|
patient VI
|
marker: Epcam(+),CD45(-)
disease state: human CRC
cell type: epithelial cells
individual: patient VI
|
expression data from epithelial cells
|
| Sample_geo_accession | GSM967330
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967330/suppl/GSM967330_ACJan09--47-Epcam-VI.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967331 | GPL570 |
|
Epcam(-), CD45(+) patient VI
|
patient VI
|
marker: Epcam(-),CD45(+)
disease state: human CRC
cell type: leukocytes
individual: patient VI
|
expression data from leukocytes
|
| Sample_geo_accession | GSM967331
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967331/suppl/GSM967331_ACJan09--48-CD45-VI.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967332 | GPL570 |
|
Epcam(-), CD45(-) patient VI
|
patient VI
|
marker: Epcam(-),CD45(-)
disease state: human CRC
cell type: stromal cells
individual: patient VI
|
expression data from stromal cells
|
| Sample_geo_accession | GSM967332
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967332/suppl/GSM967332_ACJan09--49-R-VI.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967333 | GPL570 |
|
Epcam(-), CD45(+) patient VII
|
patient VII
|
marker: Epcam(-),CD45(+)
disease state: human CRC
cell type: leukocytes
individual: patient VII
|
expression data from leukocytes
|
| Sample_geo_accession | GSM967333
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967333/suppl/GSM967333_ACMarch09--124-CD45-VII.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967334 | GPL570 |
|
Epcam(+), CD45(-) patient VII
|
patient VII
|
marker: Epcam(+),CD45(-)
disease state: human CRC
cell type: epithelial cells
individual: patient VII
|
expression data from epithelial cells
|
| Sample_geo_accession | GSM967334
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967334/suppl/GSM967334_ACMarch09--125-Epcam-VII.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967335 | GPL570 |
|
Epcam(-), CD45(-) patient VII
|
patient VII
|
marker: Epcam(-),CD45(-)
disease state: human CRC
cell type: stromal cells
individual: patient VII
|
expression data from stromal cells
|
| Sample_geo_accession | GSM967335
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967335/suppl/GSM967335_ACMarch09--126-R-VII.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967336 | GPL570 |
|
Epcam(-), CD45(-) patient VIII
|
patient VIII
|
marker: Epcam(-),CD45(-)
disease state: human CRC
cell type: stromal cells
individual: patient VIII
|
expression data from stromal cells
|
| Sample_geo_accession | GSM967336
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967336/suppl/GSM967336_ACMarch09--127-R-VIII.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967337 | GPL570 |
|
Epcam(+), CD45(-) patient VIII
|
patient VIII
|
marker: Epcam(+),CD45(-)
disease state: human CRC
cell type: epithelial cells
individual: patient VIII
|
expression data from epithelial cells
|
| Sample_geo_accession | GSM967337
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967337/suppl/GSM967337_ACMarch09--128-Epcam-VIII.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
GSM967338 | GPL570 |
|
Epcam(-), CD45(+) patient VIII
|
patient VIII
|
marker: Epcam(-),CD45(+)
disease state: human CRC
cell type: leukocytes
individual: patient VIII
|
expression data from leukocytes
|
| Sample_geo_accession | GSM967338
| | Sample_status | Public on Jan 17 2013
| | Sample_submission_date | Jul 16 2012
| | Sample_last_update_date | Jan 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with TRIZOL and washed with Qiagen kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled (biotin) using GeneChip Mapping 10K Xba Assay Kit (Affymetrix; catalog # 900441), according to manufacturer's instructions.
| | Sample_hyb_protocol | Affymetrix HG-U133 plus 2.0 arrays arrays were hybridized with 8 ug of labeled, amplified dsDNA, washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual.
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G
| | Sample_data_processing | We used RMA background correction, quantile normalization and RMA summarization(Gautier et al., 2004).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alexandre,,CALON
| | Sample_contact_email | alexandre.calon@gmail.com
| | Sample_contact_institute | Institute for Research in Biomedecine
| | Sample_contact_address | c/ Baldiri Reixac, 10
| | Sample_contact_city | Barcelona
| | Sample_contact_zip/postal_code | 08028
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM967nnn/GSM967338/suppl/GSM967338_ACMarch09--129-CD45-VIII.CEL.gz
| | Sample_series_id | GSE39395
| | Sample_series_id | GSE39397
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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