Search results for the GEO ID: GSE39454  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM969470 | GPL570 |
|
skeletal muscle, DM 1
|
Biceps
|
age (y): 74
gender: F
disease state: Dermatomyositis DM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969470
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969470/suppl/GSM969470_MA45_GEIM12.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969471 | GPL570 |
|
skeletal muscle, PM 1
|
Quadriceps
|
age (y): 62
gender: M
disease state: Polymyositis PM
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969471
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969471/suppl/GSM969471_MA45_GEIM54.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969472 | GPL570 |
|
skeletal muscle, Normal 1
|
Biceps
|
age (y): 38
gender: F
disease state: Normal
tissue: Biceps
|
|
| Sample_geo_accession | GSM969472
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969472/suppl/GSM969472_MA45_GEIM57.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969473 | GPL570 |
|
skeletal muscle, Normal 2
|
Biceps
|
age (y): 37
gender: F
disease state: Normal
tissue: Biceps
|
|
| Sample_geo_accession | GSM969473
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969473/suppl/GSM969473_MA45_GEIM63.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969474 | GPL570 |
|
skeletal muscle, NM 1
|
Biceps
|
age (y): 77
gender: M
disease state: necrotizing myopathy NM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969474
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969474/suppl/GSM969474_MA45_GEIM64.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969475 | GPL570 |
|
skeletal muscle, PM 2
|
Deltoid
|
age (y): 90
gender: M
disease state: Polymyositis PM
tissue: Deltoid
|
|
| Sample_geo_accession | GSM969475
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969475/suppl/GSM969475_MA45_GEIM90.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969476 | GPL570 |
|
skeletal muscle, PM 3
|
Biceps
|
age (y): 86
gender: F
disease state: Polymyositis PM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969476
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969476/suppl/GSM969476_MA45_GEIM96.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969477 | GPL570 |
|
skeletal muscle, IBM 1
|
Biceps
|
age (y): 68
gender: F
disease state: Inclusion body myositis IBM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969477
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969477/suppl/GSM969477_MA45_GEIM127.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969478 | GPL570 |
|
skeletal muscle, Normal 3
|
Quadriceps
|
age (y): 60
gender: F
disease state: Normal
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969478
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969478/suppl/GSM969478_MA45_GEIM133.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969479 | GPL570 |
|
skeletal muscle, PM 4
|
Biceps
|
age (y): 36
gender: F
disease state: Polymyositis PM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969479
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969479/suppl/GSM969479_MA45_GEIM174.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969480 | GPL570 |
|
skeletal muscle, DM 2
|
Biceps
|
age (y): 25
gender: F
disease state: Dermatomyositis DM (with PFA)
tissue: Biceps
|
|
| Sample_geo_accession | GSM969480
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969480/suppl/GSM969480_MA45_GEIM272.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969481 | GPL570 |
|
skeletal muscle, NM 2
|
Biceps
|
age (y): 64
gender: F
disease state: necrotizing myopathy NM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969481
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969481/suppl/GSM969481_MA45_GEIM306.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969482 | GPL570 |
|
skeletal muscle, PM 5
|
Biceps
|
age (y): 76
gender: F
disease state: Polymyositis PM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969482
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969482/suppl/GSM969482_MA45_GEIM312.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969483 | GPL570 |
|
skeletal muscle, DM 3
|
Biceps
|
age (y): 39
gender: F
disease state: Dermatomyositis DM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969483
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969483/suppl/GSM969483_MA45_GEIM315.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969484 | GPL570 |
|
skeletal muscle, PM 6
|
Biceps
|
age (y): 58
gender: F
disease state: Polymyositis PM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969484
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969484/suppl/GSM969484_MA45_GEIM322.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969485 | GPL570 |
|
skeletal muscle, PM 7
|
Deltoid
|
age (y): 87
gender: F
disease state: Polymyositis PM
tissue: Deltoid
|
|
| Sample_geo_accession | GSM969485
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969485/suppl/GSM969485_MA45_GEIM331.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969486 | GPL570 |
|
skeletal muscle, IBM 2
|
Quadriceps
|
age (y): 71
gender: F
disease state: Inclusion body myositis IBM
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969486
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969486/suppl/GSM969486_MA45_GEIM335.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969487 | GPL570 |
|
skeletal muscle, NM 3
|
Biceps
|
age (y): 83
gender: F
disease state: necrotizing myopathy NM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969487
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969487/suppl/GSM969487_MA45_GEIM340.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969488 | GPL570 |
|
skeletal muscle, DM 4
|
Biceps
|
age (y): 28
gender: F
disease state: Dermatomyositis DM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969488
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969488/suppl/GSM969488_MA45_GEIM349.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969489 | GPL570 |
|
skeletal muscle, IBM 3
|
Biceps
|
age (y): 76
gender: M
disease state: Inclusion body myositis IBM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969489
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969489/suppl/GSM969489_MA45_GEIM354.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969490 | GPL570 |
|
skeletal muscle, IBM 4
|
Biceps
|
age (y): 79
gender: F
disease state: Inclusion body myositis IBM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969490
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969490/suppl/GSM969490_MA45_GEIM363.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969491 | GPL570 |
|
skeletal muscle, Normal 4
|
Biceps
|
age (y): 41
gender: M
disease state: Normal
tissue: Biceps
|
|
| Sample_geo_accession | GSM969491
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969491/suppl/GSM969491_MA45_GEIM365.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969492 | GPL570 |
|
skeletal muscle, Normal 5
|
Quadriceps
|
age (y): 61
gender: F
disease state: Normal
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969492
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969492/suppl/GSM969492_MA45_GEIM368.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969493 | GPL570 |
|
skeletal muscle, IBM 5
|
Quadriceps
|
age (y): 61
gender: M
disease state: Inclusion body myositis IBM
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969493
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969493/suppl/GSM969493_MA45_GEIM372.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969494 | GPL570 |
|
skeletal muscle, IBM 6
|
Quadriceps
|
age (y): 80
gender: F
disease state: Inclusion body myositis IBM
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969494
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969494/suppl/GSM969494_MA45_GEIM373.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969495 | GPL570 |
|
skeletal muscle, IBM 7
|
Quadriceps
|
age (y): 47
gender: F
disease state: Inclusion body myositis IBM
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969495
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969495/suppl/GSM969495_MA45_GEIM374.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969496 | GPL570 |
|
skeletal muscle, NM 4
|
Quadriceps
|
age (y): 50
gender: F
disease state: necrotizing myopathy NM
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969496
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969496/suppl/GSM969496_MA45_GEIM375.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969497 | GPL570 |
|
skeletal muscle, DM 5
|
Deltoid
|
age (y): 37
gender: M
disease state: Dermatomyositis DM
tissue: Deltoid
|
|
| Sample_geo_accession | GSM969497
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969497/suppl/GSM969497_MA45_GEIM376.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969498 | GPL570 |
|
skeletal muscle, IBM 8
|
Biceps
|
age (y): 50
gender: M
disease state: Inclusion body myositis IBM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969498
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969498/suppl/GSM969498_MA45_GEIM377.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969499 | GPL570 |
|
skeletal muscle, IBM 9
|
Quadriceps
|
age (y): 61
gender: M
disease state: Inclusion body myositis IBM
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969499
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969499/suppl/GSM969499_MA45_GEIM380.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969500 | GPL570 |
|
skeletal muscle, DM 6
|
Deltoid
|
age (y): 30
gender: F
disease state: Dermatomyositis DM (with PFA)
tissue: Deltoid
|
|
| Sample_geo_accession | GSM969500
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969500/suppl/GSM969500_MA45_GEIM382.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969501 | GPL570 |
|
skeletal muscle, DM 7
|
Deltoid
|
age (y): 44
gender: F
disease state: Dermatomyositis DM (with PFA)
tissue: Deltoid
|
|
| Sample_geo_accession | GSM969501
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969501/suppl/GSM969501_MA45_GEIM383.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969502 | GPL570 |
|
skeletal muscle, PM 8
|
Biceps
|
age (y): 61
gender: F
disease state: Polymyositis PM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969502
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969502/suppl/GSM969502_MA45_GEIM385.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969503 | GPL570 |
|
skeletal muscle, DM 8
|
Biceps
|
age (y): 40
gender: M
disease state: Dermatomyositis DM (with PFA)
tissue: Biceps
|
|
| Sample_geo_accession | GSM969503
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969503/suppl/GSM969503_MA45_GEIM389.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969504 | GPL570 |
|
skeletal muscle, NM 5
|
Quadriceps
|
age (y): 71
gender: M
disease state: necrotizing myopathy NM
tissue: Quadriceps
|
|
| Sample_geo_accession | GSM969504
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969504/suppl/GSM969504_MA45_GEIM391.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
GSM969505 | GPL570 |
|
skeletal muscle, IBM 10
|
Biceps
|
age (y): 77
gender: M
disease state: Inclusion body myositis IBM
tissue: Biceps
|
|
| Sample_geo_accession | GSM969505
| | Sample_status | Public on Nov 01 2012
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Nov 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Open muscle biopsies was performed at the time of a diagnostic biopsy and immediately frozen in liquid nitrogen. RNA was extracted from muscle biopsies using the mirVana miRNA Isolation kit (Applied Biosystems/Ambion, Austin, TX).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed using fRMA normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei,,Zhu
| | Sample_contact_email | zhuw@medimmune.com
| | Sample_contact_fax | 1-301-398-8928
| | Sample_contact_department | Translational Sciences
| | Sample_contact_institute | MedImmune
| | Sample_contact_address | One MedImmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | Md
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969505/suppl/GSM969505_MA45_GEIM397.CEL.gz
| | Sample_series_id | GSE39454
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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