Search results for the GEO ID: GSE39469  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM969802 | GPL1261 |
|
proliferating cells, replicate 1
|
Murine hepatic stellate cells
|
cell type: isolated proliferating murine hepatic stellate cells
genotype: CMV-rtTA;TRE-GFP-shRNA.p53.1224
treatment: Doxycycline (1ug/ml)
genetic background: C57Bl/6
|
Gene expression data from proliferating stellate cells, with p53 knockdown
|
| Sample_geo_accession | GSM969802
| | Sample_status | Public on Apr 05 2013
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Apr 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | DMEM supplemented with 10% FBS, 1% glutamine, 100 U/ml penicillin, 100 μg/ml streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amaia,,Lujambio
| | Sample_contact_email | lujambia@mskcc.org
| | Sample_contact_laboratory | Lowe
| | Sample_contact_department | CBG
| | Sample_contact_institute | MSKCC
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969802/suppl/GSM969802_AL_G-1_Mouse430_2.CEL.gz
| | Sample_series_id | GSE39469
| | Sample_data_row_count | 45101
| | |
|
GSM969803 | GPL1261 |
|
proliferating cells, replicate 2
|
Murine hepatic stellate cells
|
cell type: isolated proliferating murine hepatic stellate cells
genotype: CMV-rtTA;TRE-GFP-shRNA.p53.1224
treatment: Doxycycline (1ug/ml)
genetic background: C57Bl/6
|
Gene expression data from proliferating stellate cells, with p53 knockdown
|
| Sample_geo_accession | GSM969803
| | Sample_status | Public on Apr 05 2013
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Apr 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | DMEM supplemented with 10% FBS, 1% glutamine, 100 U/ml penicillin, 100 μg/ml streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amaia,,Lujambio
| | Sample_contact_email | lujambia@mskcc.org
| | Sample_contact_laboratory | Lowe
| | Sample_contact_department | CBG
| | Sample_contact_institute | MSKCC
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969803/suppl/GSM969803_AL_G-2_Mouse430_2.CEL.gz
| | Sample_series_id | GSE39469
| | Sample_data_row_count | 45101
| | |
|
GSM969804 | GPL1261 |
|
proliferating cells, replicate 3
|
Murine hepatic stellate cells
|
cell type: isolated proliferating murine hepatic stellate cells
genotype: CMV-rtTA;TRE-GFP-shRNA.p53.1224
treatment: Doxycycline (1ug/ml)
genetic background: C57Bl/6
|
Gene expression data from proliferating stellate cells, with p53 knockdown
|
| Sample_geo_accession | GSM969804
| | Sample_status | Public on Apr 05 2013
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Apr 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | DMEM supplemented with 10% FBS, 1% glutamine, 100 U/ml penicillin, 100 μg/ml streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amaia,,Lujambio
| | Sample_contact_email | lujambia@mskcc.org
| | Sample_contact_laboratory | Lowe
| | Sample_contact_department | CBG
| | Sample_contact_institute | MSKCC
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969804/suppl/GSM969804_AL_G-3_Mouse430_2.CEL.gz
| | Sample_series_id | GSE39469
| | Sample_data_row_count | 45101
| | |
|
GSM969805 | GPL1261 |
|
senescent cells, replicate 1
|
Murine hepatic stellate cells
|
cell type: isolated senescent murine hepatic stellate cells
genotype: CMV-rtTA;TRE-GFP-shRNA.p53.1224
treatment: control
genetic background: C57Bl/6
|
Gene expression data from senescent stellate cells, with p53 expression
|
| Sample_geo_accession | GSM969805
| | Sample_status | Public on Apr 05 2013
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Apr 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | DMEM supplemented with 10% FBS, 1% glutamine, 100 U/ml penicillin, 100 μg/ml streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amaia,,Lujambio
| | Sample_contact_email | lujambia@mskcc.org
| | Sample_contact_laboratory | Lowe
| | Sample_contact_department | CBG
| | Sample_contact_institute | MSKCC
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969805/suppl/GSM969805_AL_S-1_Mouse430_2.CEL.gz
| | Sample_series_id | GSE39469
| | Sample_data_row_count | 45101
| | |
|
GSM969806 | GPL1261 |
|
senescent cells, replicate 2
|
Murine hepatic stellate cells
|
cell type: isolated senescent murine hepatic stellate cells
genotype: CMV-rtTA;TRE-GFP-shRNA.p53.1224
treatment: control
genetic background: C57Bl/6
|
Gene expression data from senescent stellate cells, with p53 expression
|
| Sample_geo_accession | GSM969806
| | Sample_status | Public on Apr 05 2013
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Apr 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | DMEM supplemented with 10% FBS, 1% glutamine, 100 U/ml penicillin, 100 μg/ml streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amaia,,Lujambio
| | Sample_contact_email | lujambia@mskcc.org
| | Sample_contact_laboratory | Lowe
| | Sample_contact_department | CBG
| | Sample_contact_institute | MSKCC
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969806/suppl/GSM969806_AL_S-2_Mouse430_2.CEL.gz
| | Sample_series_id | GSE39469
| | Sample_data_row_count | 45101
| | |
|
GSM969807 | GPL1261 |
|
senescent cells, replicate 3
|
Murine hepatic stellate cells
|
cell type: isolated senescent murine hepatic stellate cells
genotype: CMV-rtTA;TRE-GFP-shRNA.p53.1224
treatment: control
genetic background: C57Bl/6
|
Gene expression data from senescent stellate cells, with p53 expression
|
| Sample_geo_accession | GSM969807
| | Sample_status | Public on Apr 05 2013
| | Sample_submission_date | Jul 18 2012
| | Sample_last_update_date | Apr 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | DMEM supplemented with 10% FBS, 1% glutamine, 100 U/ml penicillin, 100 μg/ml streptomycin
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Amaia,,Lujambio
| | Sample_contact_email | lujambia@mskcc.org
| | Sample_contact_laboratory | Lowe
| | Sample_contact_department | CBG
| | Sample_contact_institute | MSKCC
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM969nnn/GSM969807/suppl/GSM969807_AL_S-3_Mouse430_2.CEL.gz
| | Sample_series_id | GSE39469
| | Sample_data_row_count | 45101
| | |
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