Search results for the GEO ID: GSE3960  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM90305 | GPL8300 |
|
Fetal Brain (HG-U95A)
|
Fetal Brain
|
Control
|
Control
|
| Sample_geo_accession | GSM90305
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90305/suppl/GSM90305.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90306 | GPL8300 |
|
37 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 38, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:78
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90306
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90306/suppl/GSM90306.CEL.gz
| | Sample_relation | Alternative to: GSM174403 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90307 | GPL8300 |
|
401 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 392, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:90
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90307
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90307/suppl/GSM90307.CEL.gz
| | Sample_relation | Alternative to: GSM174423 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90308 | GPL8300 |
|
406 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 141, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90308
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90308/suppl/GSM90308.CEL.gz
| | Sample_relation | Alternative to: GSM174399 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90309 | GPL8300 |
|
491 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 69, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:90
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90309
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90309/suppl/GSM90309.CEL.gz
| | Sample_relation | Alternative to: GSM174427 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90310 | GPL8300 |
|
989 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 70, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:100
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90310
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90310/suppl/GSM90310.CEL.gz
| | Sample_relation | Alternative to: GSM174394 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90311 | GPL8300 |
|
1005 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 229, INSS Stage:1*, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90311
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90311/suppl/GSM90311.CEL.gz
| | Sample_relation | Alternative to: GSM174393 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90312 | GPL8300 |
|
1013 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 488, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90312
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90312/suppl/GSM90312.CEL.gz
| | Sample_relation | Alternative to: GSM174391 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90313 | GPL8300 |
|
1030 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 19, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:95
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90313
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90313/suppl/GSM90313.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90314 | GPL8300 |
|
1033 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 66, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:97
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90314
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90314/suppl/GSM90314.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90315 | GPL8300 |
|
1059 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 91, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:97
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90315
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90315/suppl/GSM90315.CEL.gz
| | Sample_relation | Alternative to: GSM174390 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90316 | GPL8300 |
|
1073 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 117, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:93
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90316
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90316/suppl/GSM90316.CEL.gz
| | Sample_relation | Alternative to: GSM174409 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90317 | GPL8300 |
|
1122 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 478, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90317
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90317/suppl/GSM90317.CEL.gz
| | Sample_relation | Alternative to: GSM174457 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90318 | GPL8300 |
|
1139 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 388, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:88
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90318
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90318/suppl/GSM90318.CEL.gz
| | Sample_relation | Alternative to: GSM174460 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90319 | GPL8300 |
|
1142 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 52, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90319
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90319/suppl/GSM90319.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90320 | GPL8300 |
|
1170 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 307, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:96
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90320
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90320/suppl/GSM90320.CEL.gz
| | Sample_relation | Alternative to: GSM174464 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90321 | GPL8300 |
|
1251 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 17, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90321
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90321/suppl/GSM90321.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90322 | GPL8300 |
|
1253 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 9, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:90
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90322
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90322/suppl/GSM90322.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90323 | GPL8300 |
|
1254 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 303, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90323
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90323/suppl/GSM90323.CEL.gz
| | Sample_relation | Alternative to: GSM174450 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90324 | GPL8300 |
|
1256 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 105, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90324
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90324/suppl/GSM90324.CEL.gz
| | Sample_relation | Alternative to: GSM174412 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90325 | GPL8300 |
|
1260 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 405, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90325
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90325/suppl/GSM90325.CEL.gz
| | Sample_relation | Alternative to: GSM174417 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90326 | GPL8300 |
|
1285 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 42, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90326
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90326/suppl/GSM90326.CEL.gz
| | Sample_relation | Alternative to: GSM174421 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90327 | GPL8300 |
|
1319 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 231, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:73
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90327
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90327/suppl/GSM90327.CEL.gz
| | Sample_relation | Alternative to: GSM174435 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90328 | GPL8300 |
|
1322 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 188, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:88
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90328
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90328/suppl/GSM90328.CEL.gz
| | Sample_relation | Alternative to: GSM174436 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90329 | GPL8300 |
|
1324 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 12, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:90
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90329
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90329/suppl/GSM90329.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90330 | GPL8300 |
|
1556 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 26, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90330
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90330/suppl/GSM90330.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90331 | GPL8300 |
|
2150 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 219, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90331
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90331/suppl/GSM90331.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90332 | GPL8300 |
|
2175 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 270, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90332
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90332/suppl/GSM90332.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90333 | GPL8300 |
|
2204 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 358, INSS Stage:1, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90333
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90333/suppl/GSM90333.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90334 | GPL8300 |
|
11 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 336, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:93
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90334
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90334/suppl/GSM90334.CEL.gz
| | Sample_relation | Alternative to: GSM174386 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90335 | GPL8300 |
|
15 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 348, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:88
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90335
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90335/suppl/GSM90335.CEL.gz
| | Sample_relation | Alternative to: GSM174410 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90336 | GPL8300 |
|
46 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 193, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:87
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90336
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90336/suppl/GSM90336.CEL.gz
| | Sample_relation | Alternative to: GSM174411 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90337 | GPL8300 |
|
975 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1786, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90337
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90337/suppl/GSM90337.CEL.gz
| | Sample_relation | Alternative to: GSM174439 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90338 | GPL8300 |
|
415 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 182, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:99
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90338
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90338/suppl/GSM90338.CEL.gz
| | Sample_relation | Alternative to: GSM174398 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90339 | GPL8300 |
|
417 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 215, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:98
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90339
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90339/suppl/GSM90339.CEL.gz
| | Sample_relation | Alternative to: GSM174397 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90340 | GPL8300 |
|
430 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 160, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:ND, Tumor %:98
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90340
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90340/suppl/GSM90340.CEL.gz
| | Sample_relation | Alternative to: GSM174395 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90341 | GPL8300 |
|
1039 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 269, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90341
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90341/suppl/GSM90341.CEL.gz
| | Sample_relation | Alternative to: GSM174441 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90342 | GPL8300 |
|
1052 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 126, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:93
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90342
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90342/suppl/GSM90342.CEL.gz
| | Sample_relation | Alternative to: GSM174389 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90343 | GPL8300 |
|
1069 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 188, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:91
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90343
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90343/suppl/GSM90343.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90344 | GPL8300 |
|
1133 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 510, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:90
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90344
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90344/suppl/GSM90344.CEL.gz
| | Sample_relation | Alternative to: GSM174459 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90345 | GPL8300 |
|
1163 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 362, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:86
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90345
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90345/suppl/GSM90345.CEL.gz
| | Sample_relation | Alternative to: GSM174462 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90346 | GPL8300 |
|
1196 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 145, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:97
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90346
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90346/suppl/GSM90346.CEL.gz
| | Sample_relation | Alternative to: GSM174467 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90347 | GPL8300 |
|
1250 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 859, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:96
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90347
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90347/suppl/GSM90347.CEL.gz
| | Sample_relation | Alternative to: GSM174449 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90348 | GPL8300 |
|
1267 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 470, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:96
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90348
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90348/suppl/GSM90348.CEL.gz
| | Sample_relation | Alternative to: GSM174420 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90349 | GPL8300 |
|
1290 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 238, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:98
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90349
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90349/suppl/GSM90349.CEL.gz
| | Sample_relation | Alternative to: GSM174425 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90350 | GPL8300 |
|
1291 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 325, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:97
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90350
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90350/suppl/GSM90350.CEL.gz
| | Sample_relation | Alternative to: GSM174426 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90351 | GPL8300 |
|
1292 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 433, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90351
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90351/suppl/GSM90351.CEL.gz
| | Sample_relation | Alternative to: GSM174428 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90352 | GPL8300 |
|
1303 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 519, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:92
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90352
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90352/suppl/GSM90352.CEL.gz
| | Sample_relation | Alternative to: GSM174430 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90353 | GPL8300 |
|
1317 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 348, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:98
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90353
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90353/suppl/GSM90353.CEL.gz
| | Sample_relation | Alternative to: GSM174433 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90354 | GPL8300 |
|
2634 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 415, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90354
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90354/suppl/GSM90354.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90355 | GPL8300 |
|
58 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 723, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:72
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90355
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90355/suppl/GSM90355.CEL.gz
| | Sample_relation | Alternative to: GSM174402 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90356 | GPL8300 |
|
73 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 4580, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:85
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90356
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90356/suppl/GSM90356.CEL.gz
| | Sample_relation | Alternative to: GSM174414 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90357 | GPL8300 |
|
158 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 4174, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:96
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90357
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90357/suppl/GSM90357.CEL.gz
| | Sample_relation | Alternative to: GSM174401 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90358 | GPL8300 |
|
205 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 2321, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:90
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90358
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90358/suppl/GSM90358.CEL.gz
| | Sample_relation | Alternative to: GSM174400 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90359 | GPL8300 |
|
338 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 730, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90359
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90359/suppl/GSM90359.CEL.gz
| | Sample_relation | Alternative to: GSM174407 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90360 | GPL8300 |
|
396 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 417, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:99
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90360
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90360/suppl/GSM90360.CEL.gz
| | Sample_relation | Alternative to: GSM174408 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90361 | GPL8300 |
|
427 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 4249, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:96
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90361
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90361/suppl/GSM90361.CEL.gz
| | Sample_relation | Alternative to: GSM174396 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90362 | GPL8300 |
|
495 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 804, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:99
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90362
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90362/suppl/GSM90362.CEL.gz
| | Sample_relation | Alternative to: GSM174429 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90363 | GPL8300 |
|
499 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1873, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:96
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90363
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90363/suppl/GSM90363.CEL.gz
| | Sample_relation | Alternative to: GSM174432 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90364 | GPL8300 |
|
974 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1232, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90364
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90364/suppl/GSM90364.CEL.gz
| | Sample_relation | Alternative to: GSM174438 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90365 | GPL8300 |
|
982 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1544, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90365
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90365/suppl/GSM90365.CEL.gz
| | Sample_relation | Alternative to: GSM174440 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90366 | GPL8300 |
|
1012 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1843, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90366
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90366/suppl/GSM90366.CEL.gz
| | Sample_relation | Alternative to: GSM174388 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90367 | GPL8300 |
|
1092 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1634, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:94
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90367
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90367/suppl/GSM90367.CEL.gz
| | Sample_relation | Alternative to: GSM174404 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90368 | GPL8300 |
|
1097 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 512, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:87
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90368
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90368/suppl/GSM90368.CEL.gz
| | Sample_relation | Alternative to: GSM174453 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90369 | GPL8300 |
|
1100 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1279, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:92
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90369
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90369/suppl/GSM90369.CEL.gz
| | Sample_relation | Alternative to: GSM174454 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90370 | GPL8300 |
|
1118 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 4697, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:90
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90370
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90370/suppl/GSM90370.CEL.gz
| | Sample_relation | Alternative to: GSM174456 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90371 | GPL8300 |
|
1156 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1004, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:89
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90371
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90371/suppl/GSM90371.CEL.gz
| | Sample_relation | Alternative to: GSM174461 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90372 | GPL8300 |
|
1167 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1157, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:94
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90372
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90372/suppl/GSM90372.CEL.gz
| | Sample_relation | Alternative to: GSM174463 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90373 | GPL8300 |
|
1174 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1739, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:83
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90373
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90373/suppl/GSM90373.CEL.gz
| | Sample_relation | Alternative to: GSM174465 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90374 | GPL8300 |
|
1194 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1367, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:93
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90374
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90374/suppl/GSM90374.CEL.gz
| | Sample_relation | Alternative to: GSM174466 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90375 | GPL8300 |
|
1204 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1105, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:97
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90375
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90375/suppl/GSM90375.CEL.gz
| | Sample_relation | Alternative to: GSM174442 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90376 | GPL8300 |
|
1213 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1214, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:91
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90376
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90376/suppl/GSM90376.CEL.gz
| | Sample_relation | Alternative to: GSM174443 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90377 | GPL8300 |
|
1218 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1133, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:96
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90377
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90377/suppl/GSM90377.CEL.gz
| | Sample_relation | Alternative to: GSM174444 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90378 | GPL8300 |
|
1220 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1810, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:94
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90378
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90378/suppl/GSM90378.CEL.gz
| | Sample_relation | Alternative to: GSM174445 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90379 | GPL8300 |
|
1236 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1390, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:ND, Unb11qLOH:ND, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90379
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90379/suppl/GSM90379.CEL.gz
| | Sample_relation | Alternative to: GSM174446 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90380 | GPL8300 |
|
1258 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 632, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90380
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90380/suppl/GSM90380.CEL.gz
| | Sample_relation | Alternative to: GSM174415 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90381 | GPL8300 |
|
1310 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 2069, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90381
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90381/suppl/GSM90381.CEL.gz
| | Sample_relation | Alternative to: GSM174431 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90382 | GPL8300 |
|
1326 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 946, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:90
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90382
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90382/suppl/GSM90382.CEL.gz
| | Sample_relation | Alternative to: GSM174437 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90383 | GPL8300 |
|
1554 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1525, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90383
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol.
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90383/suppl/GSM90383.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90384 | GPL8300 |
|
1995 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 709, INSS Stage:3, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90384
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90384/suppl/GSM90384.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90385 | GPL8300 |
|
2108 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1344, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90385
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90385/suppl/GSM90385.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90386 | GPL8300 |
|
2184 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1851, INSS Stage:4, MYCN:Not Amplified, 1p36 LOH:ND, 11q23 LOH:ND, Unb11qLOH:ND, 17q gain:ND, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90386
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90386/suppl/GSM90386.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90387 | GPL8300 |
|
241 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 177, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:95
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90387
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90387/suppl/GSM90387.CEL.gz
| | Sample_relation | Alternative to: GSM174416 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90388 | GPL8300 |
|
260 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 235, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:96
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90388
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90388/suppl/GSM90388.CEL.gz
| | Sample_relation | Alternative to: GSM174419 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90389 | GPL8300 |
|
433 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1083, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90389
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90389/suppl/GSM90389.CEL.gz
| | Sample_relation | Alternative to: GSM174406 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90390 | GPL8300 |
|
493 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1500, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:100
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90390
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90390/suppl/GSM90390.CEL.gz
| | Sample_relation | Alternative to: GSM174405 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90391 | GPL8300 |
|
969 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 364, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:97
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90391
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90391/suppl/GSM90391.CEL.gz
| | Sample_relation | Alternative to: GSM174434 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90392 | GPL8300 |
|
1009 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1240, INSS Stage:4, MYCN:Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:98
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90392
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90392/suppl/GSM90392.CEL.gz
| | Sample_relation | Alternative to: GSM174392 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90393 | GPL8300 |
|
1034 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 709, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:99
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90393
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90393/suppl/GSM90393.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90394 | GPL8300 |
|
1043 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1119, INSS Stage:4, MYCN:Amplified, 1p36 LOH:No LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:93
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90394
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90394/suppl/GSM90394.CEL.gz
| | Sample_relation | Alternative to: GSM174387 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90395 | GPL8300 |
|
1066 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 200, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:93
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90395
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90395/suppl/GSM90395.CEL.gz
| | Sample_relation | Alternative to: GSM174451 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90396 | GPL8300 |
|
1068 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 405, INSS Stage:4, MYCN:Amplified, 1p36 LOH:No LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:85
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90396
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90396/suppl/GSM90396.CEL.gz
| | Sample_relation | Alternative to: GSM174452 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90397 | GPL8300 |
|
1109 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1502, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:88
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90397
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90397/suppl/GSM90397.CEL.gz
| | Sample_relation | Alternative to: GSM174455 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90398 | GPL8300 |
|
1129 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 823, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90398
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90398/suppl/GSM90398.CEL.gz
| | Sample_relation | Alternative to: GSM174458 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90399 | GPL8300 |
|
1243 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 577, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:97
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90399
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90399/suppl/GSM90399.CEL.gz
| | Sample_relation | Alternative to: GSM174447 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90400 | GPL8300 |
|
1246 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1564, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90400
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90400/suppl/GSM90400.CEL.gz
| | Sample_relation | Alternative to: GSM174448 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90401 | GPL8300 |
|
1257 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 3972, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:No Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90401
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90401/suppl/GSM90401.CEL.gz
| | Sample_relation | Alternative to: GSM174413 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90402 | GPL8300 |
|
1266 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 699, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90402
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90402/suppl/GSM90402.CEL.gz
| | Sample_relation | Alternative to: GSM174418 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90403 | GPL8300 |
|
1287 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 746, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:LOH, Unb11qLOH:Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:100
|
Primary neuroblastoma tumor.
|
| Sample_geo_accession | GSM90403
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90403/suppl/GSM90403.CEL.gz
| | Sample_relation | Alternative to: GSM174422 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90404 | GPL8300 |
|
1288 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 1626, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:ND, Tumor %:97
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90404
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90404/suppl/GSM90404.CEL.gz
| | Sample_relation | Alternative to: GSM174424 (aCGH data from the same sample)
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
| | |
|
GSM90405 | GPL8300 |
|
1749 (HG-U95A)
|
Primary Tumor
|
Age Diagnosis: 841, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:ND
|
Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
|
| Sample_geo_accession | GSM90405
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90405/suppl/GSM90405.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
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GSM90406 | GPL8300 |
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1994 (HG-U95A)
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Primary Tumor
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Age Diagnosis: 1422, INSS Stage:4, MYCN:Amplified, 1p36 LOH:LOH, 11q23 LOH:No LOH, Unb11qLOH:No Unbalanced LOH, 17q gain:Unbalanced Gain, Tumor %:ND
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Primary neuroblastoma tumor. Tumor annotation : ND is Not Done.
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| Sample_geo_accession | GSM90406
| | Sample_status | Public on Jan 04 2006
| | Sample_submission_date | Jan 03 2006
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol
| | Sample_data_processing | Statistical modeling of probe set behavior was conducted using Probe Profiler (Corimbia, Berkeley, CA) as described by the manufacturer. The software implements a model-based approach for data extraction from probe sets and weights probe pairs based on consistency of performance. Normalization to remove chip-to-chip variation is accomplished by subtracting the second percentile intensity value and dividing by the interquartile range (IQR). A quantitative expression score (e-score) is then calculated for each probe set.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jayanti, ,Jagannathan
| | Sample_contact_email | jagannathan@email.chop.edu
| | Sample_contact_phone | 2674262286
| | Sample_contact_department | Oncology
| | Sample_contact_institute | Childrens Hospital of Philadelphia
| | Sample_contact_address | 34th & Civic center blvd
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM90nnn/GSM90406/suppl/GSM90406.CEL.gz
| | Sample_series_id | GSE3960
| | Sample_data_row_count | 12625
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