Search results for the GEO ID: GSE39730  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM978292 | GPL570 |
|
TP53 miR-34a [00KM1474]
|
mononuclear cells from peripheral blood
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 biallelic aberration
mir-34a expression: high
|
00KM1474
|
| Sample_geo_accession | GSM978292
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978292/suppl/GSM978292_UB_AR_24032011_00KM1474.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978293 | GPL570 |
|
TP53 miR-34a [03KM1194]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 biallelic aberration
mir-34a expression: low
|
03KM1194
|
| Sample_geo_accession | GSM978293
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978293/suppl/GSM978293_UB_AR_24032011_03KM1194.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978294 | GPL570 |
|
TP53 miR-34a [03KM556]
|
mononuclear cells from peripheral blood
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 wildtype
mir-34a expression: low
|
03KM556
|
| Sample_geo_accession | GSM978294
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978294/suppl/GSM978294_UB_AR_24032011_03KM556.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978295 | GPL570 |
|
TP53 miR-34a [03PB1033]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 wildtype
mir-34a expression: high
|
03PB1033
|
| Sample_geo_accession | GSM978295
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978295/suppl/GSM978295_UB_AR_24032011_03PB1033.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978296 | GPL570 |
|
TP53 miR-34a [04PB2464]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 biallelic aberration
mir-34a expression: high
|
04PB2464
|
| Sample_geo_accession | GSM978296
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978296/suppl/GSM978296_UB_AR_24032011_04PB2464.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978297 | GPL570 |
|
TP53 miR-34a [05PB1095]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 biallelic aberration
mir-34a expression: low
|
05PB1095
|
| Sample_geo_accession | GSM978297
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978297/suppl/GSM978297_UB_AR_24032011_05PB1095.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978298 | GPL570 |
|
TP53 miR-34a [06KM0622]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 biallelic aberration
mir-34a expression: low
|
06KM0622
|
| Sample_geo_accession | GSM978298
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978298/suppl/GSM978298_UB_AR_24032011_06KM0622.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978299 | GPL570 |
|
TP53 miR-34a [06KM2756]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 wildtype
mir-34a expression: high
|
06KM2756
|
| Sample_geo_accession | GSM978299
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978299/suppl/GSM978299_UB_AR_24032011_06KM2756.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978300 | GPL570 |
|
TP53 miR-34a [06PB5792]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 biallelic aberration
mir-34a expression: high
|
06PB5792
|
| Sample_geo_accession | GSM978300
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978300/suppl/GSM978300_UB_AR_24032011_06PB5792.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978301 | GPL570 |
|
TP53 miR-34a [07KM4055]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 wildtype
mir-34a expression: low
|
07KM4055
|
| Sample_geo_accession | GSM978301
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978301/suppl/GSM978301_UB_AR_24032011_07KM4055.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
|
GSM978302 | GPL570 |
|
TP53 miR-34a [07KM4218]
|
mononuclear cells from bone marrow
|
disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 wildtype
mir-34a expression: high
|
07KM4218
|
| Sample_geo_accession | GSM978302
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978302/suppl/GSM978302_UB_AR_24032011_07KM4218.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
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GSM978303 | GPL570 |
|
TP53 miR-34a [08PB0892]
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mononuclear cells from bone marrow
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disease: AML
karyotype: complex karyotype
tp53 mutation status: p53 wildtype
mir-34a expression: low
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08PB0892
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| Sample_geo_accession | GSM978303
| | Sample_status | Public on Aug 03 2012
| | Sample_submission_date | Jul 30 2012
| | Sample_last_update_date | Aug 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples are from untreated patients (de novo AML)
| | Sample_growth_protocol_ch1 | not applicable
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | The total RNA was purified with a TRIzol-based protocol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.
| | Sample_hyb_protocol | Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.
| | Sample_scan_protocol | Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.
| | Sample_data_processing | The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978303/suppl/GSM978303_UB_AR_24032011_08PB0892.CEL.gz
| | Sample_series_id | GSE39730
| | Sample_data_row_count | 54675
| | |
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