Result

Search results for the GEO ID: GSE39766

(Click on the check boxes provided under "Select for analysis", to initiate grouping)

(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down)

GSM ID

GPL ID

Select for analysis

Title

Source name

Description

Characteristics

GSM978879

GPL1261

1day_IRI45

Kidney exposed to 45 min IRI, collected at 1 day after IRI.

strain: FVB/N gender: male gender: 6-8 week weight: within 22-26 g

Gene expression data from kidney exposed to 45min IRI 1day after IRI.

Sample_geo_accession	GSM978879
Sample_status	Public on Aug 10 2012
Sample_submission_date	Jul 31 2012
Sample_last_update_date	Aug 10 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MIce were anesthetized with intraperitoneal injection of 50 mg / kg pentobarbital sodium and placed on a homeothermic table to maintain body temperature at 40 ˚C. Flank incisions were made to expose renal pedicles. Renal pedicles were clamped by unilateral with arterial microclamps, and released after each time of clamping (0 min, 45 min, 60 min) and the wounds were sutured, kidneys were collected at indicated times after reperfusion.
Sample_growth_protocol_ch1	Mice were maintained in the animal facility of Kyoto Prefectural University of Medicine, Japan.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the GeneChip 3’IVT Express Kit User Manual from 250 ug total RNA.
Sample_hyb_protocol	10 ug of cRNA were hybridized according to the GeneChip 3’IVT Express Kit User Manual. GeneChips were washed and stained according to the GeneChip 3’IVT Express Kit User Manual.
Sample_scan_protocol	GeneChips were scanned using the GeneChip® Scanner 3000.
Sample_data_processing	The data were analyzed using Affymetrix GeneChip Command Console Software and Affymetrix Expression Console Software.
Sample_platform_id	GPL1261
Sample_contact_name	Takaomi,,Adachi
Sample_contact_email	taka117@koto.kpu-m.ac.jp
Sample_contact_department	Nephrology
Sample_contact_institute	kyoto prefectural university of medicine
Sample_contact_address	Kajiicho 465
Sample_contact_city	Kyoto
Sample_contact_zip/postal_code	602-8566
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978879/suppl/GSM978879_EA0822_01.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978879/suppl/GSM978879_EA0822_01_scale.CHP.gz
Sample_series_id	GSE39766
Sample_data_row_count	45101

GSM978880

GPL1261

1day_IRI60

Kidney exposed to 60 min IRI, collected at 1 day after IRI.

strain: FVB/N gender: male gender: 6-8 week weight: within 22-26 g

Gene expression data from kidney exposed to 60min IRI 1day after IRI.

Sample_geo_accession	GSM978880
Sample_status	Public on Aug 10 2012
Sample_submission_date	Jul 31 2012
Sample_last_update_date	Aug 10 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MIce were anesthetized with intraperitoneal injection of 50 mg / kg pentobarbital sodium and placed on a homeothermic table to maintain body temperature at 40 ˚C. Flank incisions were made to expose renal pedicles. Renal pedicles were clamped by unilateral with arterial microclamps, and released after each time of clamping (0 min, 45 min, 60 min) and the wounds were sutured, kidneys were collected at indicated times after reperfusion.
Sample_growth_protocol_ch1	Mice were maintained in the animal facility of Kyoto Prefectural University of Medicine, Japan.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the GeneChip 3’IVT Express Kit User Manual from 250 ug total RNA.
Sample_hyb_protocol	10 ug of cRNA were hybridized according to the GeneChip 3’IVT Express Kit User Manual. GeneChips were washed and stained according to the GeneChip 3’IVT Express Kit User Manual.
Sample_scan_protocol	GeneChips were scanned using the GeneChip® Scanner 3000.
Sample_data_processing	The data were analyzed using Affymetrix GeneChip Command Console Software and Affymetrix Expression Console Software.
Sample_platform_id	GPL1261
Sample_contact_name	Takaomi,,Adachi
Sample_contact_email	taka117@koto.kpu-m.ac.jp
Sample_contact_department	Nephrology
Sample_contact_institute	kyoto prefectural university of medicine
Sample_contact_address	Kajiicho 465
Sample_contact_city	Kyoto
Sample_contact_zip/postal_code	602-8566
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978880/suppl/GSM978880_EA0822_02.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978880/suppl/GSM978880_EA0822_02_scale.CHP.gz
Sample_series_id	GSE39766
Sample_data_row_count	45101

GSM978881

GPL1261

1day_IRI0

Kidney exposed to 0 min IRI, collected at 1 day after IRI.

strain: FVB/N gender: male gender: 6-8 week weight: within 22-26 g

Gene expression data from kidney exposed to 0min IRI 1day after IRI.

Sample_geo_accession	GSM978881
Sample_status	Public on Aug 10 2012
Sample_submission_date	Jul 31 2012
Sample_last_update_date	Aug 10 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MIce were anesthetized with intraperitoneal injection of 50 mg / kg pentobarbital sodium and placed on a homeothermic table to maintain body temperature at 40 ˚C. Flank incisions were made to expose renal pedicles. Renal pedicles were clamped by unilateral with arterial microclamps, and released after each time of clamping (0 min, 45 min, 60 min) and the wounds were sutured, kidneys were collected at indicated times after reperfusion.
Sample_growth_protocol_ch1	Mice were maintained in the animal facility of Kyoto Prefectural University of Medicine, Japan.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the GeneChip 3’IVT Express Kit User Manual from 250 ug total RNA.
Sample_hyb_protocol	10 ug of cRNA were hybridized according to the GeneChip 3’IVT Express Kit User Manual. GeneChips were washed and stained according to the GeneChip 3’IVT Express Kit User Manual.
Sample_scan_protocol	GeneChips were scanned using the GeneChip® Scanner 3000.
Sample_data_processing	The data were analyzed using Affymetrix GeneChip Command Console Software and Affymetrix Expression Console Software.
Sample_platform_id	GPL1261
Sample_contact_name	Takaomi,,Adachi
Sample_contact_email	taka117@koto.kpu-m.ac.jp
Sample_contact_department	Nephrology
Sample_contact_institute	kyoto prefectural university of medicine
Sample_contact_address	Kajiicho 465
Sample_contact_city	Kyoto
Sample_contact_zip/postal_code	602-8566
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978881/suppl/GSM978881_EA0822_03.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978881/suppl/GSM978881_EA0822_03_scale.CHP.gz
Sample_series_id	GSE39766
Sample_data_row_count	45101

GSM978882

GPL1261

3day_IRI45

Kidney exposed to 45 min IRI, collected at 3 day after IRI.

strain: FVB/N gender: male gender: 6-8 week weight: within 22-26 g

Gene expression data from kidney exposed to 45min IRI 3day after IRI.

Sample_geo_accession	GSM978882
Sample_status	Public on Aug 10 2012
Sample_submission_date	Jul 31 2012
Sample_last_update_date	Aug 10 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MIce were anesthetized with intraperitoneal injection of 50 mg / kg pentobarbital sodium and placed on a homeothermic table to maintain body temperature at 40 ˚C. Flank incisions were made to expose renal pedicles. Renal pedicles were clamped by unilateral with arterial microclamps, and released after each time of clamping (0 min, 45 min, 60 min) and the wounds were sutured, kidneys were collected at indicated times after reperfusion.
Sample_growth_protocol_ch1	Mice were maintained in the animal facility of Kyoto Prefectural University of Medicine, Japan.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the GeneChip 3’IVT Express Kit User Manual from 250 ug total RNA.
Sample_hyb_protocol	10 ug of cRNA were hybridized according to the GeneChip 3’IVT Express Kit User Manual. GeneChips were washed and stained according to the GeneChip 3’IVT Express Kit User Manual.
Sample_scan_protocol	GeneChips were scanned using the GeneChip® Scanner 3000.
Sample_data_processing	The data were analyzed using Affymetrix GeneChip Command Console Software and Affymetrix Expression Console Software.
Sample_platform_id	GPL1261
Sample_contact_name	Takaomi,,Adachi
Sample_contact_email	taka117@koto.kpu-m.ac.jp
Sample_contact_department	Nephrology
Sample_contact_institute	kyoto prefectural university of medicine
Sample_contact_address	Kajiicho 465
Sample_contact_city	Kyoto
Sample_contact_zip/postal_code	602-8566
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978882/suppl/GSM978882_EA0822_04.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978882/suppl/GSM978882_EA0822_04_scale.CHP.gz
Sample_series_id	GSE39766
Sample_data_row_count	45101

GSM978883

GPL1261

3day_IRI60

Kidney exposed to 60 min IRI, collected at 3 day after IRI.

strain: FVB/N gender: male gender: 6-8 week weight: within 22-26 g

Gene expression data from kidney exposed to 60min IRI 3day after IRI.

Sample_geo_accession	GSM978883
Sample_status	Public on Aug 10 2012
Sample_submission_date	Jul 31 2012
Sample_last_update_date	Aug 10 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MIce were anesthetized with intraperitoneal injection of 50 mg / kg pentobarbital sodium and placed on a homeothermic table to maintain body temperature at 40 ˚C. Flank incisions were made to expose renal pedicles. Renal pedicles were clamped by unilateral with arterial microclamps, and released after each time of clamping (0 min, 45 min, 60 min) and the wounds were sutured, kidneys were collected at indicated times after reperfusion.
Sample_growth_protocol_ch1	Mice were maintained in the animal facility of Kyoto Prefectural University of Medicine, Japan.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the GeneChip 3’IVT Express Kit User Manual from 250 ug total RNA.
Sample_hyb_protocol	10 ug of cRNA were hybridized according to the GeneChip 3’IVT Express Kit User Manual. GeneChips were washed and stained according to the GeneChip 3’IVT Express Kit User Manual.
Sample_scan_protocol	GeneChips were scanned using the GeneChip® Scanner 3000.
Sample_data_processing	The data were analyzed using Affymetrix GeneChip Command Console Software and Affymetrix Expression Console Software.
Sample_platform_id	GPL1261
Sample_contact_name	Takaomi,,Adachi
Sample_contact_email	taka117@koto.kpu-m.ac.jp
Sample_contact_department	Nephrology
Sample_contact_institute	kyoto prefectural university of medicine
Sample_contact_address	Kajiicho 465
Sample_contact_city	Kyoto
Sample_contact_zip/postal_code	602-8566
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978883/suppl/GSM978883_EA0822_05.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978883/suppl/GSM978883_EA0822_05_scale.CHP.gz
Sample_series_id	GSE39766
Sample_data_row_count	45101

GSM978884

GPL1261

3day_IRI0

Kidney exposed to 0 min IRI, collected at 3 day after IRI.

strain: FVB/N gender: male gender: 6-8 week weight: within 22-26 g

Gene expression data from kidney exposed to 0min IRI 3day after IRI.

Sample_geo_accession	GSM978884
Sample_status	Public on Aug 10 2012
Sample_submission_date	Jul 31 2012
Sample_last_update_date	Aug 10 2012
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	MIce were anesthetized with intraperitoneal injection of 50 mg / kg pentobarbital sodium and placed on a homeothermic table to maintain body temperature at 40 ˚C. Flank incisions were made to expose renal pedicles. Renal pedicles were clamped by unilateral with arterial microclamps, and released after each time of clamping (0 min, 45 min, 60 min) and the wounds were sutured, kidneys were collected at indicated times after reperfusion.
Sample_growth_protocol_ch1	Mice were maintained in the animal facility of Kyoto Prefectural University of Medicine, Japan.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the GeneChip 3’IVT Express Kit User Manual from 250 ug total RNA.
Sample_hyb_protocol	10 ug of cRNA were hybridized according to the GeneChip 3’IVT Express Kit User Manual. GeneChips were washed and stained according to the GeneChip 3’IVT Express Kit User Manual.
Sample_scan_protocol	GeneChips were scanned using the GeneChip® Scanner 3000.
Sample_data_processing	The data were analyzed using Affymetrix GeneChip Command Console Software and Affymetrix Expression Console Software.
Sample_platform_id	GPL1261
Sample_contact_name	Takaomi,,Adachi
Sample_contact_email	taka117@koto.kpu-m.ac.jp
Sample_contact_department	Nephrology
Sample_contact_institute	kyoto prefectural university of medicine
Sample_contact_address	Kajiicho 465
Sample_contact_city	Kyoto
Sample_contact_zip/postal_code	602-8566
Sample_contact_country	Japan
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978884/suppl/GSM978884_EA0822_06.CEL.gz
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM978nnn/GSM978884/suppl/GSM978884_EA0822_06_scale.CHP.gz
Sample_series_id	GSE39766
Sample_data_row_count	45101

Make groups for comparisons

(2 groups will be compared at a time)

Select GSMs and click on "Add groups"

Enter the group name here:

Select expression type

Transcripts profile based on;

A. Differential status (Up/Down regulation)

B. Absolute calls (Transcribed/Not-detected)

Filter results by number of probes