Search results for the GEO ID: GSE40122  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM986010 | GPL570 |
|
Control STAU rep1
|
Organotypic human epidermis
|
treatment: Control STAU 1
tissue: Organotypic human epidermis
|
replicate 1
|
| Sample_geo_accession | GSM986010
| | Sample_status | Public on Oct 10 2012
| | Sample_submission_date | Aug 14 2012
| | Sample_last_update_date | Oct 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nucleofection with siRNA targeting the gene of interest or a non-targeting control
| | Sample_growth_protocol_ch1 | Keratinocytes were grown in Gibco SFM medium and nucleofected with a Lonza normal human keratinocyte kit according to manufacturer's protocol. After nucleofection, cells recovered in cell culture for 12-24 hours and then were seeded onto devitalized human dermis.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM986nnn/GSM986010/suppl/GSM986010_ctrl_STAU1.CEL.gz
| | Sample_series_id | GSE40122
| | Sample_series_id | GSE40123
| | Sample_data_row_count | 54675
| | |
|
GSM986011 | GPL570 |
|
Control STAU rep2
|
Organotypic human epidermis
|
treatment: Control STAU 2
tissue: Organotypic human epidermis
|
replicate 2
|
| Sample_geo_accession | GSM986011
| | Sample_status | Public on Oct 10 2012
| | Sample_submission_date | Aug 14 2012
| | Sample_last_update_date | Oct 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nucleofection with siRNA targeting the gene of interest or a non-targeting control
| | Sample_growth_protocol_ch1 | Keratinocytes were grown in Gibco SFM medium and nucleofected with a Lonza normal human keratinocyte kit according to manufacturer's protocol. After nucleofection, cells recovered in cell culture for 12-24 hours and then were seeded onto devitalized human dermis.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM986nnn/GSM986011/suppl/GSM986011_ctrl_STAU2.CEL.gz
| | Sample_series_id | GSE40122
| | Sample_series_id | GSE40123
| | Sample_data_row_count | 54675
| | |
|
GSM986012 | GPL570 |
|
Control TINCR repA
|
Organotypic human epidermis
|
treatment: Control TINCR A
tissue: Organotypic human epidermis
|
replicate 1
|
| Sample_geo_accession | GSM986012
| | Sample_status | Public on Oct 10 2012
| | Sample_submission_date | Aug 14 2012
| | Sample_last_update_date | Oct 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nucleofection with siRNA targeting the gene of interest or a non-targeting control
| | Sample_growth_protocol_ch1 | Keratinocytes were grown in Gibco SFM medium and nucleofected with a Lonza normal human keratinocyte kit according to manufacturer's protocol. After nucleofection, cells recovered in cell culture for 12-24 hours and then were seeded onto devitalized human dermis.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM986nnn/GSM986012/suppl/GSM986012_ctrl_TINCR_A.CEL.gz
| | Sample_series_id | GSE40122
| | Sample_series_id | GSE40123
| | Sample_data_row_count | 54675
| | |
|
GSM986013 | GPL570 |
|
Control TINCR repB
|
Organotypic human epidermis
|
treatment: Control TINCR B
tissue: Organotypic human epidermis
|
replicate 2
|
| Sample_geo_accession | GSM986013
| | Sample_status | Public on Oct 10 2012
| | Sample_submission_date | Aug 14 2012
| | Sample_last_update_date | Oct 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nucleofection with siRNA targeting the gene of interest or a non-targeting control
| | Sample_growth_protocol_ch1 | Keratinocytes were grown in Gibco SFM medium and nucleofected with a Lonza normal human keratinocyte kit according to manufacturer's protocol. After nucleofection, cells recovered in cell culture for 12-24 hours and then were seeded onto devitalized human dermis.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM986nnn/GSM986013/suppl/GSM986013_ctrl_TINCR_B.CEL.gz
| | Sample_series_id | GSE40122
| | Sample_series_id | GSE40123
| | Sample_data_row_count | 54675
| | |
|
GSM986014 | GPL570 |
|
siSTAU rep1
|
Organotypic human epidermis
|
treatment: STAU Knock down 1
tissue: Organotypic human epidermis
|
replicate 1
|
| Sample_geo_accession | GSM986014
| | Sample_status | Public on Oct 10 2012
| | Sample_submission_date | Aug 14 2012
| | Sample_last_update_date | Oct 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nucleofection with siRNA targeting the gene of interest or a non-targeting control
| | Sample_growth_protocol_ch1 | Keratinocytes were grown in Gibco SFM medium and nucleofected with a Lonza normal human keratinocyte kit according to manufacturer's protocol. After nucleofection, cells recovered in cell culture for 12-24 hours and then were seeded onto devitalized human dermis.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM986nnn/GSM986014/suppl/GSM986014_siSTAUA1.CEL.gz
| | Sample_series_id | GSE40122
| | Sample_series_id | GSE40123
| | Sample_data_row_count | 54675
| | |
|
GSM986015 | GPL570 |
|
siSTAU rep2
|
Organotypic human epidermis
|
treatment: STAU Knock down 2
tissue: Organotypic human epidermis
|
replicate 2
|
| Sample_geo_accession | GSM986015
| | Sample_status | Public on Oct 10 2012
| | Sample_submission_date | Aug 14 2012
| | Sample_last_update_date | Oct 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nucleofection with siRNA targeting the gene of interest or a non-targeting control
| | Sample_growth_protocol_ch1 | Keratinocytes were grown in Gibco SFM medium and nucleofected with a Lonza normal human keratinocyte kit according to manufacturer's protocol. After nucleofection, cells recovered in cell culture for 12-24 hours and then were seeded onto devitalized human dermis.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM986nnn/GSM986015/suppl/GSM986015_siSTAUA2.CEL.gz
| | Sample_series_id | GSE40122
| | Sample_series_id | GSE40123
| | Sample_data_row_count | 54675
| | |
|
GSM986016 | GPL570 |
|
siTINCR repA
|
Organotypic human epidermis
|
treatment: TINCR Knock down A
tissue: Organotypic human epidermis
|
replicate 2
|
| Sample_geo_accession | GSM986016
| | Sample_status | Public on Oct 10 2012
| | Sample_submission_date | Aug 14 2012
| | Sample_last_update_date | Oct 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nucleofection with siRNA targeting the gene of interest or a non-targeting control
| | Sample_growth_protocol_ch1 | Keratinocytes were grown in Gibco SFM medium and nucleofected with a Lonza normal human keratinocyte kit according to manufacturer's protocol. After nucleofection, cells recovered in cell culture for 12-24 hours and then were seeded onto devitalized human dermis.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM986nnn/GSM986016/suppl/GSM986016_siTINCR_A.CEL.gz
| | Sample_series_id | GSE40122
| | Sample_series_id | GSE40123
| | Sample_data_row_count | 54675
| | |
|
GSM986017 | GPL570 |
|
siTINCR repB
|
Organotypic human epidermis
|
treatment: TINCR Knock down B
tissue: Organotypic human epidermis
|
replicate 2
|
| Sample_geo_accession | GSM986017
| | Sample_status | Public on Oct 10 2012
| | Sample_submission_date | Aug 14 2012
| | Sample_last_update_date | Oct 10 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Nucleofection with siRNA targeting the gene of interest or a non-targeting control
| | Sample_growth_protocol_ch1 | Keratinocytes were grown in Gibco SFM medium and nucleofected with a Lonza normal human keratinocyte kit according to manufacturer's protocol. After nucleofection, cells recovered in cell culture for 12-24 hours and then were seeded onto devitalized human dermis.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM986nnn/GSM986017/suppl/GSM986017_siTINCR_B.CEL.gz
| | Sample_series_id | GSE40122
| | Sample_series_id | GSE40123
| | Sample_data_row_count | 54675
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