Search results for the GEO ID: GSE40182 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM987946 | GPL570 |
|
Preterm labor trophoblasts at 0hr, biological replicate 1
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987946
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987946/suppl/GSM987946_PTL0h1.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987947 | GPL570 |
|
Preterm labor trophoblasts at 0hr, biological replicate 2
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987947
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987947/suppl/GSM987947_PTL0h2.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987948 | GPL570 |
|
Preterm labor trophoblasts at 0hr, biological replicate 3
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987948
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987948/suppl/GSM987948_PTL0h3.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987949 | GPL570 |
|
Preterm labor trophoblasts at 0hr, biological replicate 4
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987949
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987949/suppl/GSM987949_PTL0h4.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987950 | GPL570 |
|
Preterm labor trophoblasts at 0hr, biological replicate 5
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987950
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987950/suppl/GSM987950_PTL0h5.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987951 | GPL570 |
|
Preterm labor trophoblasts at 12hr, biological replicate 1
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987951
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987951/suppl/GSM987951_PTL12h1.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987952 | GPL570 |
|
Preterm labor trophoblasts at 12hr, biological replicate 2
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987952
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987952/suppl/GSM987952_PTL12h2.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987953 | GPL570 |
|
Preterm labor trophoblasts at 12hr, biological replicate 3
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987953
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987953/suppl/GSM987953_PTL12h3.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987954 | GPL570 |
|
Preterm labor trophoblasts at 12hr, biological replicate 4
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987954
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987954/suppl/GSM987954_PTL12h4.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987955 | GPL570 |
|
Preterm labor trophoblasts at 12hr, biological replicate 5
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987955
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987955/suppl/GSM987955_PTL12h5.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987956 | GPL570 |
|
Preterm labor trophoblasts at 24hr, biological replicate 1
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987956
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987956/suppl/GSM987956_PTL24h1.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987957 | GPL570 |
|
Preterm labor trophoblasts at 24hr, biological replicate 2
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987957
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987957/suppl/GSM987957_PTL24h2.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987958 | GPL570 |
|
Preterm labor trophoblasts at 24hr, biological replicate 3
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987958
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987958/suppl/GSM987958_PTL24h3.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987959 | GPL570 |
|
Preterm labor trophoblasts at 24hr, biological replicate 4
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987959
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987959/suppl/GSM987959_PTL24h4.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987960 | GPL570 |
|
Preterm labor trophoblasts at 24hr, biological replicate 5
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987960
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987960/suppl/GSM987960_PTL24h5.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987961 | GPL570 |
|
Preterm labor trophoblasts at 48hr, biological replicate 1
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987961
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987961/suppl/GSM987961_PTL48h1.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987962 | GPL570 |
|
Preterm labor trophoblasts at 48hr, biological replicate 2
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987962
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987962/suppl/GSM987962_PTL48h2.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987963 | GPL570 |
|
Preterm labor trophoblasts at 48hr, biological replicate 3
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987963
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987963/suppl/GSM987963_PTL48h3.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987964 | GPL570 |
|
Preterm labor trophoblasts at 48hr, biological replicate 4
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preterm labor
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987964
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987964/suppl/GSM987964_PTL48h4.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987965 | GPL570 |
|
Preeclampsia trophoblasts at 0hr, biological replicate 1
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987965
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987965/suppl/GSM987965_PRE0h1.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987966 | GPL570 |
|
Preeclampsia trophoblasts at 0hr, biological replicate 2
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987966
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987966/suppl/GSM987966_PRE0h2.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987967 | GPL570 |
|
Preeclampsia trophoblasts at 0hr, biological replicate 3
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987967
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987967/suppl/GSM987967_PRE0h3.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987968 | GPL570 |
|
Preeclampsia trophoblasts at 0hr, biological replicate 4
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987968
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987968/suppl/GSM987968_PRE0h4.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987969 | GPL570 |
|
Preeclampsia trophoblasts at 0hr, biological replicate 5
|
Primary trophoblasts at 0hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 0
|
|
Sample_geo_accession | GSM987969
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987969/suppl/GSM987969_PRE0h5.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987970 | GPL570 |
|
Preeclampsia trophoblasts at 12hr, biological replicate 6
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987970
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987970/suppl/GSM987970_PRE12h1.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987971 | GPL570 |
|
Preeclampsia trophoblasts at 12hr, biological replicate 7
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987971
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987971/suppl/GSM987971_PRE12h2.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987972 | GPL570 |
|
Preeclampsia trophoblasts at 12hr, biological replicate 8
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987972
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987972/suppl/GSM987972_PRE12h3.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987973 | GPL570 |
|
Preeclampsia trophoblasts at 12hr, biological replicate 9
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987973
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987973/suppl/GSM987973_PRE12h4.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987974 | GPL570 |
|
Preeclampsia trophoblasts at 12hr, biological replicate 10
|
Primary trophoblasts at 12hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 12
|
|
Sample_geo_accession | GSM987974
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987974/suppl/GSM987974_PRE12h5.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987975 | GPL570 |
|
Preeclampsia trophoblasts at 24hr, biological replicate 11
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987975
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987975/suppl/GSM987975_PRE24h1.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987976 | GPL570 |
|
Preeclampsia trophoblasts at 24hr, biological replicate 12
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987976
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987976/suppl/GSM987976_PRE24h2.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987977 | GPL570 |
|
Preeclampsia trophoblasts at 24hr, biological replicate 13
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987977
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987977/suppl/GSM987977_PRE24h3.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987978 | GPL570 |
|
Preeclampsia trophoblasts at 24hr, biological replicate 14
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987978
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987978/suppl/GSM987978_PRE24h4.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987979 | GPL570 |
|
Preeclampsia trophoblasts at 24hr, biological replicate 15
|
Primary trophoblasts at 24hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 24
|
|
Sample_geo_accession | GSM987979
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987979/suppl/GSM987979_PRE24h5.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987980 | GPL570 |
|
Preeclampsia trophoblasts at 48hr, biological replicate 16
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987980
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987980/suppl/GSM987980_PRE48h1.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987981 | GPL570 |
|
Preeclampsia trophoblasts at 48hr, biological replicate 17
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987981
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987981/suppl/GSM987981_PRE48h2.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987982 | GPL570 |
|
Preeclampsia trophoblasts at 48hr, biological replicate 18
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987982
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987982/suppl/GSM987982_PRE48h3.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987983 | GPL570 |
|
Preeclampsia trophoblasts at 48hr, biological replicate 19
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987983
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987983/suppl/GSM987983_PRE48h4.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
GSM987984 | GPL570 |
|
Preeclampsia trophoblasts at 48hr, biological replicate 20
|
Primary trophoblasts at 48hr
|
tissue: placenta
phenotype: preeclampsia
culture time (hrs): 48
|
|
Sample_geo_accession | GSM987984
| Sample_status | Public on Aug 17 2012
| Sample_submission_date | Aug 16 2012
| Sample_last_update_date | Aug 17 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Purified primary trophoblasts were cultured on Matrigel coated wells in DME H-21
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy Plus.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Double-stranded cDNAs were generated from total RNA samples by using SuperScript II reverse transcriptase (Invitrogen) and a T7-oligo primer (QIAGEN). Biotin-labeled cRNA was synthesized by in vitro transcription using an Enzo Bioassay RNA labeling kit
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized
| Sample_scan_protocol | GeneChips were scanned using a GeneArray Scanner
| Sample_data_processing | RMA normalized
| Sample_platform_id | GPL570
| Sample_contact_name | Susan,,Fisher
| Sample_contact_laboratory | Fisher
| Sample_contact_department | Obstretrics, Gynecology and Reproductive Sciences
| Sample_contact_institute | UCSF
| Sample_contact_address | 513 PARNASSUS AVE
| Sample_contact_city | SAN FRANCISCO
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 94143
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM987nnn/GSM987984/suppl/GSM987984_PRE48h5.CEL.gz
| Sample_series_id | GSE40182
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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