Search results for the GEO ID: GSE40220  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM988527 | GPL570 |
|
C4
|
Colon
|
tissue: Colon
cell type: Normal epithelium
|
S0387F001
|
| Sample_geo_accession | GSM988527
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988527/suppl/GSM988527_S0387F001.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
| | |
|
GSM988528 | GPL570 |
|
DU3
|
Duodenum
|
tissue: Duodenum
cell type: Normal epithelium
|
S0387F002
|
| Sample_geo_accession | GSM988528
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988528/suppl/GSM988528_S0387F002.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
| | |
|
GSM988529 | GPL570 |
|
OS1
|
Oesophagus
|
tissue: Oesophagus
cell type: Normal epithelium
|
S0387F003
|
| Sample_geo_accession | GSM988529
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988529/suppl/GSM988529_S0387F003.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
| | |
|
GSM988530 | GPL570 |
|
OS3
|
Oesophagus
|
tissue: Oesophagus
cell type: Normal epithelium
|
S0387F004
|
| Sample_geo_accession | GSM988530
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988530/suppl/GSM988530_S0387F004.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
| | |
|
GSM988531 | GPL570 |
|
C2
|
Colon
|
tissue: Colon
cell type: Normal epithelium
|
S0387F005
|
| Sample_geo_accession | GSM988531
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988531/suppl/GSM988531_S0387F005.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
| | |
|
GSM988532 | GPL570 |
|
DU1
|
Duodenum
|
tissue: Duodenum
cell type: Normal epithelium
|
S0387F006
|
| Sample_geo_accession | GSM988532
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988532/suppl/GSM988532_S0387F006.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
| | |
|
GSM988533 | GPL570 |
|
OS4
|
Oesophagus
|
tissue: Oesophagus
cell type: Normal epithelium
|
S0387F007
|
| Sample_geo_accession | GSM988533
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988533/suppl/GSM988533_S0387F007.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
| | |
|
GSM988534 | GPL570 |
|
DU4
|
Duodenum
|
tissue: Duodenum
cell type: Normal epithelium
|
S0387F008
|
| Sample_geo_accession | GSM988534
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988534/suppl/GSM988534_S0387F008.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
| | |
|
GSM988535 | GPL570 |
|
C3
|
Colon
|
tissue: Colon
cell type: Normal epithelium
|
S0387F009
|
| Sample_geo_accession | GSM988535
| | Sample_status | Public on Jul 07 2013
| | Sample_submission_date | Aug 20 2012
| | Sample_last_update_date | Jul 07 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Samples were extracted by homogenisation in Tri reagent followed by clean up with Min-elute RNA purification kit.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | as per instructions by affymetrix
| | Sample_hyb_protocol | as per instructions by affymetrix
| | Sample_scan_protocol | as per instructions by affymetrix
| | Sample_data_processing | RMA normalized using Expression Console 1.2.0.20
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shane,P,Duggan
| | Sample_contact_email | shduggan@tcd.ie
| | Sample_contact_phone | 0035318963273
| | Sample_contact_fax | 0035318963503
| | Sample_contact_laboratory | Rm 1.16
| | Sample_contact_department | Clinical Medicine
| | Sample_contact_institute | Institute of Molecular Medicine
| | Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| | Sample_contact_city | Dublin
| | Sample_contact_zip/postal_code | Dublin 8
| | Sample_contact_country | Ireland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM988nnn/GSM988535/suppl/GSM988535_S0387F009.CEL.gz
| | Sample_series_id | GSE40220
| | Sample_data_row_count | 54675
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