Search results for the GEO ID: GSE40249  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM989244 | GPL1261 |
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WT vagina
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WT_E2-treated vagina
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strain background: C57/Bl6
genotype/variation: wild type
gender: female
age: 6 months
treated with: estradio (50 µg/kg/d) for 3 d
tissue: vagina
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2667_A_C57_B16.CEL
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| Sample_geo_accession | GSM989244
| | Sample_status | Public on Aug 22 2012
| | Sample_submission_date | Aug 21 2012
| | Sample_last_update_date | Aug 22 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Ovariectomized on 11 d. Treated with E2 (50 µg/kg/d x 3 d)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA isolated guanidium over cesium chloride
| | Sample_label_ch1 | Cy3
| | Sample_label_protocol_ch1 | Labeled cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix mouse 2.0 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ruth,A,Word
| | Sample_contact_email | ruth.word@UTSouthwestern.edu
| | Sample_contact_laboratory | Word
| | Sample_contact_department | Ob-Gyn
| | Sample_contact_institute | Univ TX Southwestern Med Ctr
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-9032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM989nnn/GSM989244/suppl/GSM989244_2667_A_C57_B16.CEL.gz
| | Sample_series_id | GSE40249
| | Sample_data_row_count | 45101
| | |
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GSM989245 | GPL1261 |
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Fbln5 KO vagina
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Fbln5 KO_E2-treated vagina
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strain background: C57/Bl6
genotype/variation: Fbln5-/- (Fblin5 KO)
gender: female
age: 6 months
treated with: estradio (50 µg/kg/d) for 3 d
tissue: vagina
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2667_B_F5_KO.CEL
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| Sample_geo_accession | GSM989245
| | Sample_status | Public on Aug 22 2012
| | Sample_submission_date | Aug 21 2012
| | Sample_last_update_date | Aug 22 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Ovariectomized on 11 d. Treated with E2 (50 µg/kg/d x 3 d)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA isolated guanidium over cesium chloride
| | Sample_label_ch1 | Cy3
| | Sample_label_protocol_ch1 | Labeled cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix mouse 2.0 gene chips. Chips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ruth,A,Word
| | Sample_contact_email | ruth.word@UTSouthwestern.edu
| | Sample_contact_laboratory | Word
| | Sample_contact_department | Ob-Gyn
| | Sample_contact_institute | Univ TX Southwestern Med Ctr
| | Sample_contact_address | 5323 Harry Hines Blvd
| | Sample_contact_city | Dallas
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 75390-9032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM989nnn/GSM989245/suppl/GSM989245_2667_B_F5_KO.CEL.gz
| | Sample_series_id | GSE40249
| | Sample_data_row_count | 45101
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