Search results for the GEO ID: GSE40282  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM990641 | GPL1261 |
|
Lsd1fl/fl biological replicate #1 [Gr1dim Mac1]
|
Gr1dim Mac1+ granulocytic progenitor cells
|
strain: C57BL/6/SV129
tissue: adult bone marrow
gender: male
genotype/variation: Lsd1fl/fl
|
FACS-purified primary Gr1dim Mac1+ bone marrow granulocyte progenitor cells
|
| Sample_geo_accession | GSM990641
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Both, Lsd1fl/fl and Lsd1fl/fl Mx1Cre mice were injected with three doses of high molecular weight p(I:C) (Invivogen, San Diego, USA) at a concentration of 12.5µg/g body weight.
| | Sample_growth_protocol_ch1 | Freshly isolated primary bone marrow cells, the cells have NOT been cultured in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | We RMA-normalized the arrays using the expression file creator package from GenePattern (Broad Institute, Boston, USA). The RMA-normalized *.gct files were then analyzed by the comparative marker selection package from GenePattern (Broad Institute, Boston, USA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,A.,Kerenyi
| | Sample_contact_laboratory | Stuart Orkin Laboratory
| | Sample_contact_department | Hematology / Oncology
| | Sample_contact_institute | Boston Children's Hospital and Dana Farber Cancer Institute
| | Sample_contact_address | 1 Blackfan Street - Karp Research Building
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM990nnn/GSM990641/suppl/GSM990641_SO2010051901.cel.gz
| | Sample_series_id | GSE40282
| | Sample_series_id | GSE40605
| | Sample_data_row_count | 45101
| | |
|
GSM990642 | GPL1261 |
|
Lsd1fl/fl biological replicate #2 [Gr1dim Mac1]
|
Gr1dim Mac1+ granulocytic progenitor cells
|
strain: C57BL/6/SV129
tissue: adult bone marrow
gender: male
genotype/variation: Lsd1fl/fl
|
FACS-purified primary Gr1dim Mac1+ bone marrow granulocyte progenitor cells
|
| Sample_geo_accession | GSM990642
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Both, Lsd1fl/fl and Lsd1fl/fl Mx1Cre mice were injected with three doses of high molecular weight p(I:C) (Invivogen, San Diego, USA) at a concentration of 12.5µg/g body weight.
| | Sample_growth_protocol_ch1 | Freshly isolated primary bone marrow cells, the cells have NOT been cultured in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | We RMA-normalized the arrays using the expression file creator package from GenePattern (Broad Institute, Boston, USA). The RMA-normalized *.gct files were then analyzed by the comparative marker selection package from GenePattern (Broad Institute, Boston, USA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,A.,Kerenyi
| | Sample_contact_laboratory | Stuart Orkin Laboratory
| | Sample_contact_department | Hematology / Oncology
| | Sample_contact_institute | Boston Children's Hospital and Dana Farber Cancer Institute
| | Sample_contact_address | 1 Blackfan Street - Karp Research Building
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM990nnn/GSM990642/suppl/GSM990642_SO2010051902.cel.gz
| | Sample_series_id | GSE40282
| | Sample_series_id | GSE40605
| | Sample_data_row_count | 45101
| | |
|
GSM990643 | GPL1261 |
|
Lsd1fl/fl biological replicate #3 [Gr1dim Mac1]
|
Gr1dim Mac1+ granulocytic progenitor cells
|
strain: C57BL/6/SV129
tissue: adult bone marrow
gender: male
genotype/variation: Lsd1fl/fl
|
FACS-purified primary Gr1dim Mac1+ bone marrow granulocyte progenitor cells
|
| Sample_geo_accession | GSM990643
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Both, Lsd1fl/fl and Lsd1fl/fl Mx1Cre mice were injected with three doses of high molecular weight p(I:C) (Invivogen, San Diego, USA) at a concentration of 12.5µg/g body weight.
| | Sample_growth_protocol_ch1 | Freshly isolated primary bone marrow cells, the cells have NOT been cultured in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | We RMA-normalized the arrays using the expression file creator package from GenePattern (Broad Institute, Boston, USA). The RMA-normalized *.gct files were then analyzed by the comparative marker selection package from GenePattern (Broad Institute, Boston, USA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,A.,Kerenyi
| | Sample_contact_laboratory | Stuart Orkin Laboratory
| | Sample_contact_department | Hematology / Oncology
| | Sample_contact_institute | Boston Children's Hospital and Dana Farber Cancer Institute
| | Sample_contact_address | 1 Blackfan Street - Karp Research Building
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM990nnn/GSM990643/suppl/GSM990643_SO2010051903.cel.gz
| | Sample_series_id | GSE40282
| | Sample_series_id | GSE40605
| | Sample_data_row_count | 45101
| | |
|
GSM990644 | GPL1261 |
|
Lsd1fl/fl Mx1Cre biological replicate #1 [Gr1dim Mac1]
|
Gr1dim Mac1+ granulocytic progenitor cells
|
strain: C57BL/6/SV129
tissue: adult bone marrow
gender: male
genotype/variation: Lsd1fl/fl Mx1Cre
|
FACS-purified primary Gr1dim Mac1+ bone marrow granulocyte progenitor cells
|
| Sample_geo_accession | GSM990644
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Both, Lsd1fl/fl and Lsd1fl/fl Mx1Cre mice were injected with three doses of high molecular weight p(I:C) (Invivogen, San Diego, USA) at a concentration of 12.5µg/g body weight.
| | Sample_growth_protocol_ch1 | Freshly isolated primary bone marrow cells, the cells have NOT been cultured in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | We RMA-normalized the arrays using the expression file creator package from GenePattern (Broad Institute, Boston, USA). The RMA-normalized *.gct files were then analyzed by the comparative marker selection package from GenePattern (Broad Institute, Boston, USA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,A.,Kerenyi
| | Sample_contact_laboratory | Stuart Orkin Laboratory
| | Sample_contact_department | Hematology / Oncology
| | Sample_contact_institute | Boston Children's Hospital and Dana Farber Cancer Institute
| | Sample_contact_address | 1 Blackfan Street - Karp Research Building
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM990nnn/GSM990644/suppl/GSM990644_SO2010051904.cel.gz
| | Sample_series_id | GSE40282
| | Sample_series_id | GSE40605
| | Sample_data_row_count | 45101
| | |
|
GSM990645 | GPL1261 |
|
Lsd1fl/fl Mx1Cre biological replicate #2 [Gr1dim Mac1]
|
Gr1dim Mac1+ granulocytic progenitor cells
|
strain: C57BL/6/SV129
tissue: adult bone marrow
gender: male
genotype/variation: Lsd1fl/fl Mx1Cre
|
FACS-purified primary Gr1dim Mac1+ bone marrow granulocyte progenitor cells
|
| Sample_geo_accession | GSM990645
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Both, Lsd1fl/fl and Lsd1fl/fl Mx1Cre mice were injected with three doses of high molecular weight p(I:C) (Invivogen, San Diego, USA) at a concentration of 12.5µg/g body weight.
| | Sample_growth_protocol_ch1 | Freshly isolated primary bone marrow cells, the cells have NOT been cultured in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | We RMA-normalized the arrays using the expression file creator package from GenePattern (Broad Institute, Boston, USA). The RMA-normalized *.gct files were then analyzed by the comparative marker selection package from GenePattern (Broad Institute, Boston, USA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,A.,Kerenyi
| | Sample_contact_laboratory | Stuart Orkin Laboratory
| | Sample_contact_department | Hematology / Oncology
| | Sample_contact_institute | Boston Children's Hospital and Dana Farber Cancer Institute
| | Sample_contact_address | 1 Blackfan Street - Karp Research Building
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM990nnn/GSM990645/suppl/GSM990645_SO2010051905.cel.gz
| | Sample_series_id | GSE40282
| | Sample_series_id | GSE40605
| | Sample_data_row_count | 45101
| | |
|
GSM990646 | GPL1261 |
|
Lsd1fl/fl Mx1Cre biological replicate #3 [Gr1dim Mac1]
|
Gr1dim Mac1+ granulocytic progenitor cells
|
strain: C57BL/6/SV129
tissue: adult bone marrow
gender: male
genotype/variation: Lsd1fl/fl Mx1Cre
|
FACS-purified primary Gr1dim Mac1+ bone marrow granulocyte progenitor cells
|
| Sample_geo_accession | GSM990646
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Both, Lsd1fl/fl and Lsd1fl/fl Mx1Cre mice were injected with three doses of high molecular weight p(I:C) (Invivogen, San Diego, USA) at a concentration of 12.5µg/g body weight.
| | Sample_growth_protocol_ch1 | Freshly isolated primary bone marrow cells, the cells have NOT been cultured in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Standard Affymetrix protocol.
| | Sample_scan_protocol | Standard Affymetrix protocol.
| | Sample_data_processing | We RMA-normalized the arrays using the expression file creator package from GenePattern (Broad Institute, Boston, USA). The RMA-normalized *.gct files were then analyzed by the comparative marker selection package from GenePattern (Broad Institute, Boston, USA).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Marc,A.,Kerenyi
| | Sample_contact_laboratory | Stuart Orkin Laboratory
| | Sample_contact_department | Hematology / Oncology
| | Sample_contact_institute | Boston Children's Hospital and Dana Farber Cancer Institute
| | Sample_contact_address | 1 Blackfan Street - Karp Research Building
| | Sample_contact_city | Boston
| | Sample_contact_state | Massachusetts
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM990nnn/GSM990646/suppl/GSM990646_SO2010051906.cel.gz
| | Sample_series_id | GSE40282
| | Sample_series_id | GSE40605
| | Sample_data_row_count | 45101
| | |
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