Search results for the GEO ID: GSE40296  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM990998 | GPL1261 |
|
Telencephalon WT 1
|
E14.5 WT 1
|
age: E14.5
gender: male
tissue: dorsal telencephalon
genotype: wt
genetic background: C57BL\6
|
Gene expression data from embryos at E14.5
|
| Sample_geo_accession | GSM990998
| | Sample_status | Public on Aug 23 2012
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Aug 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dorsal Telencephalon of WT or cKO (Emx2Cre) E14.5 embryos were dissected and dissolved in Trizol immediately until RNA extraction is performed.
| | Sample_growth_protocol_ch1 | Mice were housed in SPF conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug cRNA were hybridized for 16 hr at 45C on GeneChip Mus Musculus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Expression Console Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Siok Lay,,Tan
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | Sakyo-Ku, Shogoin Kawahara
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM990nnn/GSM990998/suppl/GSM990998_EA0897_01.CEL.gz
| | Sample_series_id | GSE40296
| | Sample_data_row_count | 45037
| | |
|
GSM990999 | GPL1261 |
|
Telencephalon WT 2
|
E14.5 WT 2
|
age: E14.5
gender: male
tissue: dorsal telencephalon
genotype: wt
genetic background: C57BL\6
|
Gene expression data from embryos at E14.5
|
| Sample_geo_accession | GSM990999
| | Sample_status | Public on Aug 23 2012
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Aug 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dorsal Telencephalon of WT or cKO (Emx2Cre) E14.5 embryos were dissected and dissolved in Trizol immediately until RNA extraction is performed.
| | Sample_growth_protocol_ch1 | Mice were housed in SPF conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug cRNA were hybridized for 16 hr at 45C on GeneChip Mus Musculus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Expression Console Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Siok Lay,,Tan
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | Sakyo-Ku, Shogoin Kawahara
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM990nnn/GSM990999/suppl/GSM990999_EA0897_02.CEL.gz
| | Sample_series_id | GSE40296
| | Sample_data_row_count | 45037
| | |
|
GSM991000 | GPL1261 |
|
Telencephalon WT 3
|
E14.5 WT 3
|
age: E14.5
gender: male
tissue: dorsal telencephalon
genotype: wt
genetic background: C57BL\6
|
Gene expression data from embryos at E14.5
|
| Sample_geo_accession | GSM991000
| | Sample_status | Public on Aug 23 2012
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Aug 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dorsal Telencephalon of WT or cKO (Emx2Cre) E14.5 embryos were dissected and dissolved in Trizol immediately until RNA extraction is performed.
| | Sample_growth_protocol_ch1 | Mice were housed in SPF conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug cRNA were hybridized for 16 hr at 45C on GeneChip Mus Musculus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Expression Console Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Siok Lay,,Tan
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | Sakyo-Ku, Shogoin Kawahara
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM991nnn/GSM991000/suppl/GSM991000_EA0800_01.CEL.gz
| | Sample_series_id | GSE40296
| | Sample_data_row_count | 45037
| | |
|
GSM991001 | GPL1261 |
|
Telencephalon cKO 1
|
E14.5 cKO 1
|
age: E14.5
gender: male
tissue: dorsal telencephalon
genotype: histone methyltransferase ESET KO
genetic background: C57BL\6
|
Gene expression data from embryos at E14.5
|
| Sample_geo_accession | GSM991001
| | Sample_status | Public on Aug 23 2012
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Aug 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dorsal Telencephalon of WT or cKO (Emx2Cre) E14.5 embryos were dissected and dissolved in Trizol immediately until RNA extraction is performed.
| | Sample_growth_protocol_ch1 | Mice were housed in SPF conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug cRNA were hybridized for 16 hr at 45C on GeneChip Mus Musculus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Expression Console Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Siok Lay,,Tan
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | Sakyo-Ku, Shogoin Kawahara
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM991nnn/GSM991001/suppl/GSM991001_EA0897_03.CEL.gz
| | Sample_series_id | GSE40296
| | Sample_data_row_count | 45037
| | |
|
GSM991002 | GPL1261 |
|
Telencephalon cKO 2
|
E14.5 cKO 2
|
age: E14.5
gender: male
tissue: dorsal telencephalon
genotype: histone methyltransferase ESET KO
genetic background: C57BL\6
|
Gene expression data from embryos at E14.5
|
| Sample_geo_accession | GSM991002
| | Sample_status | Public on Aug 23 2012
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Aug 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dorsal Telencephalon of WT or cKO (Emx2Cre) E14.5 embryos were dissected and dissolved in Trizol immediately until RNA extraction is performed.
| | Sample_growth_protocol_ch1 | Mice were housed in SPF conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug cRNA were hybridized for 16 hr at 45C on GeneChip Mus Musculus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Expression Console Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Siok Lay,,Tan
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | Sakyo-Ku, Shogoin Kawahara
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM991nnn/GSM991002/suppl/GSM991002_EA0897_04.CEL.gz
| | Sample_series_id | GSE40296
| | Sample_data_row_count | 45037
| | |
|
GSM991003 | GPL1261 |
|
Telencephalon cKO 3
|
E14.5 cKO 3
|
age: E14.5
gender: male
tissue: dorsal telencephalon
genotype: histone methyltransferase ESET KO
genetic background: C57BL\6
|
Gene expression data from embryos at E14.5
|
| Sample_geo_accession | GSM991003
| | Sample_status | Public on Aug 23 2012
| | Sample_submission_date | Aug 22 2012
| | Sample_last_update_date | Aug 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dorsal Telencephalon of WT or cKO (Emx2Cre) E14.5 embryos were dissected and dissolved in Trizol immediately until RNA extraction is performed.
| | Sample_growth_protocol_ch1 | Mice were housed in SPF conditions.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 250 ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10ug cRNA were hybridized for 16 hr at 45C on GeneChip Mus Musculus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed with Expression Console Software using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Siok Lay,,Tan
| | Sample_contact_institute | Kyoto University
| | Sample_contact_address | Sakyo-Ku, Shogoin Kawahara
| | Sample_contact_city | Kyoto
| | Sample_contact_zip/postal_code | 606-8507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM991nnn/GSM991003/suppl/GSM991003_EA0800_02.CEL.gz
| | Sample_series_id | GSE40296
| | Sample_data_row_count | 45037
| | |
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