Search results for the GEO ID: GSE40443 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM994248 | GPL1261 |
|
TBmc iTreg Rep1
|
Tbmc CD4+ Foxp3+ Treg Cells After 1 week Oral Ova
|
strain: Balb/c
cell type: Mesenteric LN CD4+ Foxp3+ Nrp-
age: 4-6 Weeks
|
|
Sample_geo_accession | GSM994248
| Sample_status | Public on Aug 30 2012
| Sample_submission_date | Aug 28 2012
| Sample_last_update_date | Aug 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Jonathan,,Weiss
| Sample_contact_email | jmw499@nyumc.org
| Sample_contact_institute | NYU Medical Center
| Sample_contact_address | 550 First Ave
| Sample_contact_city | New York
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994248/suppl/GSM994248_Induced_Treg_Rep1.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994248/suppl/GSM994248_Induced_Treg_Rep1.CHP.gz
| Sample_series_id | GSE40443
| Sample_series_id | GSE40488
| Sample_data_row_count | 45101
| |
|
GSM994249 | GPL1261 |
|
TBmc iTreg Rep2
|
Tbmc CD4+ Foxp3+ Treg Cells After 1 week Oral Ova
|
strain: Balb/c TBmc Foxp3 GFP
cell type: Mesenteric LN CD4+ Foxp3+ Nrp-
age: 4-6 Weeks
|
|
Sample_geo_accession | GSM994249
| Sample_status | Public on Aug 30 2012
| Sample_submission_date | Aug 28 2012
| Sample_last_update_date | Aug 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Jonathan,,Weiss
| Sample_contact_email | jmw499@nyumc.org
| Sample_contact_institute | NYU Medical Center
| Sample_contact_address | 550 First Ave
| Sample_contact_city | New York
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994249/suppl/GSM994249_Induced_Treg_Rep2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994249/suppl/GSM994249_Induced_Treg_Rep2.CHP.gz
| Sample_series_id | GSE40443
| Sample_series_id | GSE40488
| Sample_data_row_count | 45101
| |
|
GSM994250 | GPL1261 |
|
TBmc iTreg Rep3
|
Tbmc CD4+ Foxp3+ Treg Cells After 1 week Oral Ova
|
strain: Balb/c TBmc Foxp3 GFP
cell type: Mesenteric LN CD4+ Foxp3+ Nrp-
age: 4-6 Weeks
|
|
Sample_geo_accession | GSM994250
| Sample_status | Public on Aug 30 2012
| Sample_submission_date | Aug 28 2012
| Sample_last_update_date | Aug 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Jonathan,,Weiss
| Sample_contact_email | jmw499@nyumc.org
| Sample_contact_institute | NYU Medical Center
| Sample_contact_address | 550 First Ave
| Sample_contact_city | New York
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994250/suppl/GSM994250_Induced_Treg_Rep3.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994250/suppl/GSM994250_Induced_Treg_Rep3.CHP.gz
| Sample_series_id | GSE40443
| Sample_series_id | GSE40488
| Sample_data_row_count | 45101
| |
|
GSM994318 | GPL1261 |
|
Wild Type Total Treg Rep1
|
Wild Type CD4+ Foxp3+ Treg Cells
|
strain: Balb/c Wild Type Foxp3 GFP
cell type: Mesenteric LN CD4+ Foxp3+ Nrp-
age: 4-6 Weeks
|
|
Sample_geo_accession | GSM994318
| Sample_status | Public on Aug 30 2012
| Sample_submission_date | Aug 28 2012
| Sample_last_update_date | Aug 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Jonathan,,Weiss
| Sample_contact_email | jmw499@nyumc.org
| Sample_contact_institute | NYU Medical Center
| Sample_contact_address | 550 First Ave
| Sample_contact_city | New York
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994318/suppl/GSM994318_Total_Treg_Rep1.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994318/suppl/GSM994318_Total_Treg_Rep1.CHP.gz
| Sample_series_id | GSE40443
| Sample_series_id | GSE40488
| Sample_data_row_count | 45101
| |
|
GSM994319 | GPL1261 |
|
Wild Type Total Treg Rep2
|
Wild Type CD4+ Foxp3+ Treg Cells
|
strain: Balb/c Wild Type Foxp3 GFP
cell type: Mesenteric LN CD4+ Foxp3+
age: 4-6 Weeks
|
|
Sample_geo_accession | GSM994319
| Sample_status | Public on Aug 30 2012
| Sample_submission_date | Aug 28 2012
| Sample_last_update_date | Aug 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Jonathan,,Weiss
| Sample_contact_email | jmw499@nyumc.org
| Sample_contact_institute | NYU Medical Center
| Sample_contact_address | 550 First Ave
| Sample_contact_city | New York
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994319/suppl/GSM994319_Total_Treg_Rep2.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994319/suppl/GSM994319_Total_Treg_Rep2.CHP.gz
| Sample_series_id | GSE40443
| Sample_series_id | GSE40488
| Sample_data_row_count | 45101
| |
|
GSM994320 | GPL1261 |
|
Wild Type Total Treg Rep3
|
Wild Type CD4+ Foxp3+ Treg Cells
|
strain: Balb/c Wild Type Foxp3 GFP
cell type: Mesenteric LN CD4+ Foxp3+
age: 4-6 Weeks
|
|
Sample_geo_accession | GSM994320
| Sample_status | Public on Aug 30 2012
| Sample_submission_date | Aug 28 2012
| Sample_last_update_date | Aug 30 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Jonathan,,Weiss
| Sample_contact_email | jmw499@nyumc.org
| Sample_contact_institute | NYU Medical Center
| Sample_contact_address | 550 First Ave
| Sample_contact_city | New York
| Sample_contact_zip/postal_code | 10016
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994320/suppl/GSM994320_Total_Treg_Rep3.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM994nnn/GSM994320/suppl/GSM994320_Total_Treg_Rep3.CHP.gz
| Sample_series_id | GSE40443
| Sample_series_id | GSE40488
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
|
Filter results by number of probes |
|
|