Search results for the GEO ID: GSE40512  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM995423 | GPL570 |
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KOPTK1_vehicle_rep1
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T-ALL cell line
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agent: vehicle
cell line: KOPTK1
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| Sample_geo_accession | GSM995423
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KOPTK1 cells were treated with vehicle (VO) or 1 microM PD 0332991 (PD) for 48 hrs.
| | Sample_growth_protocol_ch1 | KOPTK1 cells were cultured in RPMI-1640 medium supplemented with 10% fetal calf serum (Hyclone) and Pen/Strep (100U/ml, Invitrogen).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested by Trizol followed by a column purification using RNeasy Mini kit (Qiagen) following manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995423/suppl/GSM995423_PS2012080801.CEL.gz
| | Sample_series_id | GSE40512
| | Sample_series_id | GSE40514
| | Sample_data_row_count | 54675
| | |
|
GSM995424 | GPL570 |
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KOPTK1_vehicle_rep2
|
T-ALL cell line
|
agent: vehicle
cell line: KOPTK1
|
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| Sample_geo_accession | GSM995424
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KOPTK1 cells were treated with vehicle (VO) or 1 microM PD 0332991 (PD) for 48 hrs.
| | Sample_growth_protocol_ch1 | KOPTK1 cells were cultured in RPMI-1640 medium supplemented with 10% fetal calf serum (Hyclone) and Pen/Strep (100U/ml, Invitrogen).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested by Trizol followed by a column purification using RNeasy Mini kit (Qiagen) following manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995424/suppl/GSM995424_PS2012080802.CEL.gz
| | Sample_series_id | GSE40512
| | Sample_series_id | GSE40514
| | Sample_data_row_count | 54675
| | |
|
GSM995425 | GPL570 |
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KOPTK1_vehicle_rep3
|
T-ALL cell line
|
agent: vehicle
cell line: KOPTK1
|
|
| Sample_geo_accession | GSM995425
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KOPTK1 cells were treated with vehicle (VO) or 1 microM PD 0332991 (PD) for 48 hrs.
| | Sample_growth_protocol_ch1 | KOPTK1 cells were cultured in RPMI-1640 medium supplemented with 10% fetal calf serum (Hyclone) and Pen/Strep (100U/ml, Invitrogen).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested by Trizol followed by a column purification using RNeasy Mini kit (Qiagen) following manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995425/suppl/GSM995425_PS2012080803.CEL.gz
| | Sample_series_id | GSE40512
| | Sample_series_id | GSE40514
| | Sample_data_row_count | 54675
| | |
|
GSM995426 | GPL570 |
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KOPTK1_PD0332991_rep1
|
T-ALL cell line
|
agent: CDK4/6 inhibitor PD 0332991
cell line: KOPTK1
|
|
| Sample_geo_accession | GSM995426
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KOPTK1 cells were treated with vehicle (VO) or 1 microM PD 0332991 (PD) for 48 hrs.
| | Sample_growth_protocol_ch1 | KOPTK1 cells were cultured in RPMI-1640 medium supplemented with 10% fetal calf serum (Hyclone) and Pen/Strep (100U/ml, Invitrogen).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested by Trizol followed by a column purification using RNeasy Mini kit (Qiagen) following manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995426/suppl/GSM995426_PS2012080804.CEL.gz
| | Sample_series_id | GSE40512
| | Sample_series_id | GSE40514
| | Sample_data_row_count | 54675
| | |
|
GSM995427 | GPL570 |
|
KOPTK1_PD0332991_rep2
|
T-ALL cell line
|
agent: CDK4/6 inhibitor PD 0332991
cell line: KOPTK1
|
|
| Sample_geo_accession | GSM995427
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KOPTK1 cells were treated with vehicle (VO) or 1 microM PD 0332991 (PD) for 48 hrs.
| | Sample_growth_protocol_ch1 | KOPTK1 cells were cultured in RPMI-1640 medium supplemented with 10% fetal calf serum (Hyclone) and Pen/Strep (100U/ml, Invitrogen).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested by Trizol followed by a column purification using RNeasy Mini kit (Qiagen) following manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995427/suppl/GSM995427_PS2012080805.CEL.gz
| | Sample_series_id | GSE40512
| | Sample_series_id | GSE40514
| | Sample_data_row_count | 54675
| | |
|
GSM995428 | GPL570 |
|
KOPTK1_PD0332991_rep3
|
T-ALL cell line
|
agent: CDK4/6 inhibitor PD 0332991
cell line: KOPTK1
|
|
| Sample_geo_accession | GSM995428
| | Sample_status | Public on Oct 16 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Oct 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | KOPTK1 cells were treated with vehicle (VO) or 1 microM PD 0332991 (PD) for 48 hrs.
| | Sample_growth_protocol_ch1 | KOPTK1 cells were cultured in RPMI-1640 medium supplemented with 10% fetal calf serum (Hyclone) and Pen/Strep (100U/ml, Invitrogen).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested by Trizol followed by a column purification using RNeasy Mini kit (Qiagen) following manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix biotin label protocol.
| | Sample_hyb_protocol | Standard Affymetrix 3' array hybridyzation protocol.
| | Sample_scan_protocol | Standard Affymetrix confocal laser scanner protocol.
| | Sample_data_processing | The data was normalized and analyzed by dChip software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takaomi,,Sanda
| | Sample_contact_email | takaomi_sanda@dfci.harvard.edu
| | Sample_contact_institute | Dana-Farber Cancer Institute
| | Sample_contact_address | 450 Brookline Ave
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02215
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995428/suppl/GSM995428_PS2012080806.CEL.gz
| | Sample_series_id | GSE40512
| | Sample_series_id | GSE40514
| | Sample_data_row_count | 54675
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