Search results for the GEO ID: GSE40529  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM995707 | GPL1261 |
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Adamts12 WT untreated
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distal colon from Adamts12 WT mouse
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genotype: Adamts12 WT
tissue: distal colon
treatment: none
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Gene expression data from distal colon of a healthy Adamts12-WT mouse
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| Sample_geo_accession | GSM995707
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 2% DSS (dextran sodium sulfate) in drinking water during 8 days, followed by 1 day without treatment
| | Sample_growth_protocol_ch1 | Mice were fed ad libitum and treatment started at 8-10 weeks of age
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Gene 1.0 ST Array according to the protocols recommended by the manufacturer (Affymetrix, Santa Clara, CA, USA).
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | After scanning, rawdata (Affymetrix Cel files) were processed with RMAExpress (http://RMAExpress.bmbolstad.com), using default settings
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ANGELA,,MONCADA PAZOS
| | Sample_contact_institute | UNIVERSIDAD DE OVIEDO
| | Sample_contact_address | FERNANDO BONGERA
| | Sample_contact_city | OVIEDO
| | Sample_contact_zip/postal_code | 33006
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995707/suppl/GSM995707_679D.CEL.gz
| | Sample_series_id | GSE40529
| | Sample_data_row_count | 45101
| | |
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GSM995708 | GPL1261 |
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Adamts12 KO untreated
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distal colon from Adamts12 KO mouse
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genotype: Adamts12 KO
tissue: distal colon
treatment: none
|
Gene expression data from distal colon of a healthy Adamts12-KO mouse
|
| Sample_geo_accession | GSM995708
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 2% DSS (dextran sodium sulfate) in drinking water during 8 days, followed by 1 day without treatment
| | Sample_growth_protocol_ch1 | Mice were fed ad libitum and treatment started at 8-10 weeks of age
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Gene 1.0 ST Array according to the protocols recommended by the manufacturer (Affymetrix, Santa Clara, CA, USA).
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | After scanning, rawdata (Affymetrix Cel files) were processed with RMAExpress (http://RMAExpress.bmbolstad.com), using default settings
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ANGELA,,MONCADA PAZOS
| | Sample_contact_institute | UNIVERSIDAD DE OVIEDO
| | Sample_contact_address | FERNANDO BONGERA
| | Sample_contact_city | OVIEDO
| | Sample_contact_zip/postal_code | 33006
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995708/suppl/GSM995708_673D.CEL.gz
| | Sample_series_id | GSE40529
| | Sample_data_row_count | 45101
| | |
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GSM995709 | GPL1261 |
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Adamts12 WT 2%DSS
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distal colon from Adamts12 WT mouse after induction of ulcerative colitis with DSS
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genotype: Adamts12 WT
tissue: distal colon
treatment: 2% DSS
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Gene expression data from distal colon of an Adamts12-WT mouse with ulcerative colitis
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| Sample_geo_accession | GSM995709
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 2% DSS (dextran sodium sulfate) in drinking water during 8 days, followed by 1 day without treatment
| | Sample_growth_protocol_ch1 | Mice were fed ad libitum and treatment started at 8-10 weeks of age
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Gene 1.0 ST Array according to the protocols recommended by the manufacturer (Affymetrix, Santa Clara, CA, USA).
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | After scanning, rawdata (Affymetrix Cel files) were processed with RMAExpress (http://RMAExpress.bmbolstad.com), using default settings
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ANGELA,,MONCADA PAZOS
| | Sample_contact_institute | UNIVERSIDAD DE OVIEDO
| | Sample_contact_address | FERNANDO BONGERA
| | Sample_contact_city | OVIEDO
| | Sample_contact_zip/postal_code | 33006
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995709/suppl/GSM995709_686D.CEL.gz
| | Sample_series_id | GSE40529
| | Sample_data_row_count | 45101
| | |
|
GSM995710 | GPL1261 |
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Adamts12 KO 2%DSS
|
distal colon from Adamts12 KO mouse after induction of ulcerative colitis with DSS
|
genotype: Adamts12 KO
tissue: distal colon
treatment: 2% DSS
|
Gene expression data from distal colon of an Adamts12-KO mouse with ulcerative colitis
|
| Sample_geo_accession | GSM995710
| | Sample_status | Public on Sep 01 2012
| | Sample_submission_date | Aug 31 2012
| | Sample_last_update_date | Sep 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 2% DSS (dextran sodium sulfate) in drinking water during 8 days, followed by 1 day without treatment
| | Sample_growth_protocol_ch1 | Mice were fed ad libitum and treatment started at 8-10 weeks of age
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix Mouse Gene 1.0 ST Array according to the protocols recommended by the manufacturer (Affymetrix, Santa Clara, CA, USA).
| | Sample_scan_protocol | Washing and scanning were performed using Fluidics Station 400 and GeneChip Scanner (Affymetrix Inc.).
| | Sample_data_processing | After scanning, rawdata (Affymetrix Cel files) were processed with RMAExpress (http://RMAExpress.bmbolstad.com), using default settings
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ANGELA,,MONCADA PAZOS
| | Sample_contact_institute | UNIVERSIDAD DE OVIEDO
| | Sample_contact_address | FERNANDO BONGERA
| | Sample_contact_city | OVIEDO
| | Sample_contact_zip/postal_code | 33006
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM995nnn/GSM995710/suppl/GSM995710_700D.CEL.gz
| | Sample_series_id | GSE40529
| | Sample_data_row_count | 45101
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