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Process data
Search results for the GEO ID: GSE40583
(Click on the check boxes provided under "Select for analysis", to initiate grouping)
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group.
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GSM ID
GPL ID
Select for analysis
Title
Source name
Description
Characteristics
GSM997175
GPL571
IHA scramble siRNA replicate 1
immortalized human astrocyte cell line
cell line: immortalized human astrocytes sirna: scramble
GSM997176
GPL571
IHA scramble siRNA replicate 2
immortalized human astrocyte cell line
cell line: immortalized human astrocytes sirna: scramble
GSM997183
GPL571
IHA FAT siRNA#1 replicate 1
immortalized human astrocyte cell line
cell line: immortalized human astrocytes sirna: FAT1 siRNA #1
GSM997188
GPL571
IHA FAT siRNA#1 replicate 2
immortalized human astrocyte cell line
cell line: immortalized human astrocytes sirna: FAT1 siRNA #1
GSM997189
GPL571
IHA FAT siRNA#2 replicate 1
immortalized human astrocyte cell line
cell line: immortalized human astrocytes sirna: FAT1 siRNA #2
GSM997190
GPL571
IHA FAT siRNA#2 replicate 2
immortalized human astrocyte cell line
cell line: immortalized human astrocytes sirna: FAT1 siRNA #2
GSM997191
GPL571
U87 scramble siRNA replicate 1
U87 cell line
cell line: U87 sirna: scramble
GSM997192
GPL571
U87 scramble siRNA replicate 2
U87 cell line
cell line: U87 sirna: scramble
GSM997193
GPL571
U87 FAT1 siRNA#1 replicate 1
U87 cell line
cell line: U87 sirna: FAT1 siRNA #1
GSM997194
GPL571
U87 FAT1 siRNA#1 replicate 2
U87 cell line
cell line: U87 sirna: FAT1 siRNA #1
GSM997195
GPL571
U87 FAT1 siRNA#2 replicate 1
U87 cell line
cell line: U87 sirna: FAT1 siRNA #2
GSM997196
GPL571
U87 FAT1 siRNA#2 replicate 2
U87 cell line
cell line: U87 sirna: FAT1 siRNA #2
GSM997197
GPL571
U251 scramble siRNA replicate 1
U251 cell line
cell line: U251 sirna: scramble
GSM997198
GPL571
U251 scramble siRNA replicate 2
U251 cell line
cell line: U251 sirna: scramble
GSM997199
GPL571
U251 FAT1 siRNA#1 replicate 1
U251 cell line
cell line: U251 sirna: FAT1 siRNA #1
GSM997200
GPL571
U251 FAT1 siRNA#1 replicate 2
U251 cell line
cell line: U251 sirna: FAT1 siRNA #1
GSM997201
GPL571
U251 FAT1 siRNA#2 replicate 1
U251 cell line
cell line: U251 sirna: FAT1 siRNA #2
GSM997202
GPL571
U251 FAT1 siRNA#2 replicate 2
U251 cell line
cell line: U251 sirna: FAT1 siRNA #2
Make groups for comparisons
(2 groups will be compared at a time)
Select GSMs and click on "Add groups"
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Select expression type
Transcripts profile based on;
A. Differential status (Up/Down regulation)
Regulation type
Up
Down
Up/Down
Fold change
2
4
6
8
10
p-value
0.05
0.01
0.001
0.0001
0.00001
B. Absolute calls (Transcribed/Not-detected)
Derive calls within/across groups
Within groups
Detection status
Transcribed
Not-detected
Both
Percentage detection
10
20
30
40
50
60
70
80
90
100
Across groups
Detection status
First group:
Transcribed
Not-detected
-
Second group:
Transcribed
Not-detected
Percentage detection
First group:
10
20
30
40
50
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80
90
100
-
Second group:
10
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