Search results for the GEO ID: GSE40611 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM997850 | GPL570 |
|
parotid tissue from control 1
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997850
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997850/suppl/GSM997850_Control_1.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997851 | GPL570 |
|
parotid tissue from control 2
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997851
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997851/suppl/GSM997851_Control_2.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997852 | GPL570 |
|
parotid tissue from control 3
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997852
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997852/suppl/GSM997852_Control_3.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997853 | GPL570 |
|
parotid tissue from control 4
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997853
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997853/suppl/GSM997853_Control_4.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997854 | GPL570 |
|
parotid tissue from control 5
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997854
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997854/suppl/GSM997854_Control_5.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997855 | GPL570 |
|
parotid tissue from control 7
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997855
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997855/suppl/GSM997855_Control_7.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997856 | GPL570 |
|
parotid tissue from control 8
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997856
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997856/suppl/GSM997856_Control_8.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997857 | GPL570 |
|
parotid tissue from control 9
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997857
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997857/suppl/GSM997857_Control_9.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997858 | GPL570 |
|
parotid tissue from control 10
|
parotid tissue from control
|
disease status: Control
batch: 1
|
|
Sample_geo_accession | GSM997858
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997858/suppl/GSM997858_Control10.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997859 | GPL570 |
|
parotid tissue from control 12
|
parotid tissue from control
|
disease status: Control
batch: 2
|
|
Sample_geo_accession | GSM997859
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997859/suppl/GSM997859_CT-12.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997860 | GPL570 |
|
parotid tissue from control 13
|
parotid tissue from control
|
disease status: Control
batch: 2
|
|
Sample_geo_accession | GSM997860
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997860/suppl/GSM997860_CT-13.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997861 | GPL570 |
|
parotid tissue from control 14
|
parotid tissue from control
|
disease status: Control
batch: 2
|
|
Sample_geo_accession | GSM997861
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997861/suppl/GSM997861_CT-14.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997862 | GPL570 |
|
parotid tissue from control 15
|
parotid tissue from control
|
disease status: Control
batch: 2
|
|
Sample_geo_accession | GSM997862
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997862/suppl/GSM997862_CT-15.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997863 | GPL570 |
|
parotid tissue from control 16
|
parotid tissue from control
|
disease status: Control
batch: 3
|
|
Sample_geo_accession | GSM997863
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997863/suppl/GSM997863_CT16.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997864 | GPL570 |
|
parotid tissue from control 17
|
parotid tissue from control
|
disease status: Control
batch: 3
|
|
Sample_geo_accession | GSM997864
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997864/suppl/GSM997864_CT17.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997865 | GPL570 |
|
parotid tissue from control 18
|
parotid tissue from control
|
disease status: Control
batch: 3
|
|
Sample_geo_accession | GSM997865
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997865/suppl/GSM997865_CT18.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997866 | GPL570 |
|
parotid tissue from control 19
|
parotid tissue from control
|
disease status: Control
batch: 3
|
|
Sample_geo_accession | GSM997866
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997866/suppl/GSM997866_CT19.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997867 | GPL570 |
|
parotid tissue from control 20
|
parotid tissue from control
|
disease status: Control
batch: 3
|
|
Sample_geo_accession | GSM997867
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997867/suppl/GSM997867_CT20.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997868 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 1
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997868
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997868/suppl/GSM997868_Patient_1.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997869 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 2
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997869
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997869/suppl/GSM997869_Patient_2.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997870 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 3
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997870
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997870/suppl/GSM997870_Patient_3.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997871 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 4
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997871
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997871/suppl/GSM997871_Patient_4.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997872 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 5
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997872
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997872/suppl/GSM997872_Patient_5.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997873 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 6
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997873
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997873/suppl/GSM997873_Patient_6.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997874 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 7
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997874
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997874/suppl/GSM997874_Patient_7.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997875 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 8
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997875
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997875/suppl/GSM997875_Patient_8.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997876 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 9
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997876
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997876/suppl/GSM997876_Patient_9.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997877 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 10
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 1
|
|
Sample_geo_accession | GSM997877
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997877/suppl/GSM997877_Patient10.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997878 | GPL570 |
|
parotid tissue from sicca patient 3
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 2
|
|
Sample_geo_accession | GSM997878
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997878/suppl/GSM997878_SC-03.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997879 | GPL570 |
|
parotid tissue from sicca patient 4
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 2
|
|
Sample_geo_accession | GSM997879
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997879/suppl/GSM997879_SC-04.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997880 | GPL570 |
|
parotid tissue from sicca patient 5
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 2
|
|
Sample_geo_accession | GSM997880
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997880/suppl/GSM997880_SC-05.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997881 | GPL570 |
|
parotid tissue from sicca patient 6
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 2
|
|
Sample_geo_accession | GSM997881
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997881/suppl/GSM997881_SC-06.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997882 | GPL570 |
|
parotid tissue from sicca patient 8
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997882
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997882/suppl/GSM997882_SC08.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997883 | GPL570 |
|
parotid tissue from sicca patient 9
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997883
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997883/suppl/GSM997883_SC09.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997884 | GPL570 |
|
parotid tissue from sicca patient 10
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997884
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997884/suppl/GSM997884_SC10.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997885 | GPL570 |
|
parotid tissue from sicca patient 12
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997885
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997885/suppl/GSM997885_SC12.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997886 | GPL570 |
|
parotid tissue from sicca patient 13
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997886
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997886/suppl/GSM997886_SC13.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997887 | GPL570 |
|
parotid tissue from sicca patient 15
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997887
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997887/suppl/GSM997887_SC15.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997888 | GPL570 |
|
parotid tissue from sicca patient 16
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997888
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997888/suppl/GSM997888_SC16.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997889 | GPL570 |
|
parotid tissue from sicca patient 17
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997889
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997889/suppl/GSM997889_SC17.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997890 | GPL570 |
|
parotid tissue from sicca patient 19
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997890
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997890/suppl/GSM997890_SC19.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997891 | GPL570 |
|
parotid tissue from sicca patient 20
|
parotid tissue from sicca patient
|
disease status: Sicca
batch: 3
|
|
Sample_geo_accession | GSM997891
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997891/suppl/GSM997891_SC20.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997892 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 13
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 2
|
|
Sample_geo_accession | GSM997892
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997892/suppl/GSM997892_SS-13.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997893 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 14
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 2
|
|
Sample_geo_accession | GSM997893
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997893/suppl/GSM997893_SS-14.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997894 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 15
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 2
|
|
Sample_geo_accession | GSM997894
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997894/suppl/GSM997894_SS-15.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997895 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 16
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 2
|
|
Sample_geo_accession | GSM997895
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997895/suppl/GSM997895_SS-16.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997896 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 17
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 3
|
|
Sample_geo_accession | GSM997896
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997896/suppl/GSM997896_SS17.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997897 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 18
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 3
|
|
Sample_geo_accession | GSM997897
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997897/suppl/GSM997897_SS18.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
GSM997898 | GPL570 |
|
parotid tissue from primary Sjogren syndrome patient 19
|
parotid tissue from primary Sjogren syndrome patient
|
disease status: pSS
batch: 3
|
|
Sample_geo_accession | GSM997898
| Sample_status | Public on Sep 06 2012
| Sample_submission_date | Sep 05 2012
| Sample_last_update_date | Sep 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | parotid tissue from humans
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted using mirVana PARIS Kit (Ambion/Applied Biosystems).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2.5 ug total RNA
| Sample_hyb_protocol | 15μg of labeled cRNA was fragmented into 50- to 200-bp fragments and assessed for quality with a 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA)
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| Sample_data_processing | Microarray data were processed and normalized using MAS5.
| Sample_platform_id | GPL570
| Sample_contact_name | Steve,,Horvath
| Sample_contact_email | shorvath@mednet.ucla.edu
| Sample_contact_laboratory | Horvath
| Sample_contact_department | Human Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 695 Charles E. Young Drive South, Box 708822
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095-7088
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997898/suppl/GSM997898_SS19.CEL.gz
| Sample_series_id | GSE40611
| Sample_data_row_count | 54675
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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