Search results for the GEO ID: GSE40613  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM997916 | GPL570 |
|
Set1, PEC, biological rep1
|
pulmonary endothelial cells (cultured alone)
|
cell type: pulmonary endothelial cells
|
PEC.1
|
| Sample_geo_accession | GSM997916
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997916/suppl/GSM997916_Khakoo_PEC-R1_05-19-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997917 | GPL570 |
|
Set1, PEC, biological rep2
|
pulmonary endothelial cells (cultured alone)
|
cell type: pulmonary endothelial cells
|
PEC.2
|
| Sample_geo_accession | GSM997917
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997917/suppl/GSM997917_Khakoo_PEC-R2_05-19-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997918 | GPL570 |
|
Set1, PEC, biological rep3
|
pulmonary endothelial cells (cultured alone)
|
cell type: pulmonary endothelial cells
|
PEC.3
|
| Sample_geo_accession | GSM997918
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997918/suppl/GSM997918_Khakoo_PEC-R3_05-19-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997919 | GPL570 |
|
Set1, PEC, biological rep4
|
pulmonary endothelial cells (cultured alone)
|
cell type: pulmonary endothelial cells
|
PEC.4
|
| Sample_geo_accession | GSM997919
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997919/suppl/GSM997919_Khakoo_PEC-R4_05-19-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997920 | GPL570 |
|
Set1, PCO, biological rep1
|
pulmonary endothelial cells (co-cultured with MSCs then FACS purified)
|
cell type: pulmonary endothelial cells
|
PCO.1
|
| Sample_geo_accession | GSM997920
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997920/suppl/GSM997920_Khakoo_PCO-R5_05-19-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997921 | GPL570 |
|
Set1, PCO, biological rep2
|
pulmonary endothelial cells (co-cultured with MSCs then FACS purified)
|
cell type: pulmonary endothelial cells
|
PCO.2
|
| Sample_geo_accession | GSM997921
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997921/suppl/GSM997921_Khakoo_PCO-R6_05-19-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997922 | GPL570 |
|
Set1, PCO, biological rep3
|
pulmonary endothelial cells (co-cultured with MSCs then FACS purified)
|
cell type: pulmonary endothelial cells
|
PCO.3
|
| Sample_geo_accession | GSM997922
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997922/suppl/GSM997922_Khakoo_PCO-R7_05-19-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997923 | GPL570 |
|
Set1, PCO, biological rep4
|
pulmonary endothelial cells (co-cultured with MSCs then FACS purified)
|
cell type: pulmonary endothelial cells
|
PCO.4
|
| Sample_geo_accession | GSM997923
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997923/suppl/GSM997923_Khakoo_PCO-R8_05-19-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997924 | GPL570 |
|
Set2, MCO, biological rep1
|
mesenchymal stem cells (co-cultured with PECs then FACS purified)
|
cell type: mesenchymal stem cells
|
MCO.1
|
| Sample_geo_accession | GSM997924
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997924/suppl/GSM997924_Khakoo_MCO-M9_05-20-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997925 | GPL570 |
|
Set2, MCO, biological rep2
|
mesenchymal stem cells (co-cultured with PECs then FACS purified)
|
cell type: mesenchymal stem cells
|
MCO.2
|
| Sample_geo_accession | GSM997925
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997925/suppl/GSM997925_Khakoo_MCO-M10_05-20-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997926 | GPL570 |
|
Set2, MCO, biological rep3
|
mesenchymal stem cells (co-cultured with PECs then FACS purified)
|
cell type: mesenchymal stem cells
|
MCO.3
|
| Sample_geo_accession | GSM997926
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997926/suppl/GSM997926_Khakoo_MCO-M11_05-20-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997927 | GPL570 |
|
Set2, MCO, biological rep4
|
mesenchymal stem cells (co-cultured with PECs then FACS purified)
|
cell type: mesenchymal stem cells
|
MCO.4
|
| Sample_geo_accession | GSM997927
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997927/suppl/GSM997927_Khakoo_MCO-M12_05-20-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997928 | GPL570 |
|
Set2, MSC, biological rep1
|
mesenchymal stem cells (cultured alone)
|
cell type: mesenchymal stem cells
|
MSC.1
|
| Sample_geo_accession | GSM997928
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997928/suppl/GSM997928_Khakoo_MSC-M13_05-20-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997929 | GPL570 |
|
Set2, MSC, biological rep2
|
mesenchymal stem cells (cultured alone)
|
cell type: mesenchymal stem cells
|
MSC.2
|
| Sample_geo_accession | GSM997929
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997929/suppl/GSM997929_Khakoo_MSC-M14_05-20-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997930 | GPL570 |
|
Set2, MSC, biological rep3
|
mesenchymal stem cells (cultured alone)
|
cell type: mesenchymal stem cells
|
MSC.3
|
| Sample_geo_accession | GSM997930
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997930/suppl/GSM997930_Khakoo_MSC-M15_05-20-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
|
GSM997931 | GPL570 |
|
Set2, MSC, biological rep4
|
mesenchymal stem cells (cultured alone)
|
cell type: mesenchymal stem cells
|
MSC.4
|
| Sample_geo_accession | GSM997931
| | Sample_status | Public on Sep 15 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Sep 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | All cells were subjected to sorting via magnetic bead selection using CD31 antibody (endothelial cell specific)
| | Sample_growth_protocol_ch1 | MSCs cultured in MSC GM media (Lonza); PECs cultured in EGM-2MV media (Lonza); Co-cultures cultured in EGM-2MV media
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the TRIzol method (Invitrogen, Carlsbad, CA). RNA was purified using the RNeasy mini-kit (Qiagen, Alameda, CA) and the quality
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_hyb_protocol | Samples were amplified, labeled, and 10μg of cDNA was hybridized to the HG-U133 Plus 2.0 Affymetrix GeneChip array according the manufacturer’s protocol
| | Sample_scan_protocol | Gene Array Scanned using Microarray Suite software
| | Sample_data_processing | RMA (Robust Multichip Average) algorithm is used for quantification of the data - PEC & PCO samples are processed together, and MCO & MSC were processed together.
| | Sample_platform_id | GPL570
| | Sample_contact_name | LI,,SHEN
| | Sample_contact_email | lishen@mdanderson.org
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1400 Pressler Street
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM997nnn/GSM997931/suppl/GSM997931_Khakoo_MSC-M16_05-20-10.CEL.gz
| | Sample_series_id | GSE40613
| | Sample_data_row_count | 54675
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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