Search results for the GEO ID: GSE40635  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM998554 | GPL570 |
|
CEM DMSO treated replicate 1
|
CEM_DMSO
|
cell line: CEM
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: DMSO for 15hrs
|
CEM_NT-1
|
| Sample_geo_accession | GSM998554
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998554/suppl/GSM998554_CEM_NT-1.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998555 | GPL570 |
|
CEM DMSO treated replicate 2
|
CEM_DMSO
|
cell line: CEM
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: DMSO for 15hrs
|
CEM_NT-2
|
| Sample_geo_accession | GSM998555
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998555/suppl/GSM998555_CEM_NT-2.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998556 | GPL570 |
|
CEM PD-0332991 treated replicate1
|
CEM_PD-0332991
|
cell line: CEM
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: 1 uM PD-0332991 for 15hrs
|
CEM_PD-1
|
| Sample_geo_accession | GSM998556
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998556/suppl/GSM998556_CEM_PD-1.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998557 | GPL570 |
|
CEM PD-0332991 treated replicate2
|
CEM_PD-0332991
|
cell line: CEM
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: 1 uM PD-0332991 for 15hrs
|
CEM_PD-2
|
| Sample_geo_accession | GSM998557
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998557/suppl/GSM998557_CEM_PD-2.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998558 | GPL570 |
|
CUTL1 DMSO treated replicate 1
|
CUTL1_DMSO
|
cell line: CUTL1
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: DMSO for 15hrs
|
CUTL1_NT-1
|
| Sample_geo_accession | GSM998558
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998558/suppl/GSM998558_CUTL1_NT-1.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998559 | GPL570 |
|
CUTL1 DMSO treated replicate 2
|
CUTL1_DMSO
|
cell line: CUTL1
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: DMSO for 15hrs
|
CUTL1_NT-2
|
| Sample_geo_accession | GSM998559
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998559/suppl/GSM998559_CUTL1_NT-2.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998560 | GPL570 |
|
CUTL1 PD-0332991 treated replicate1
|
CUTL1_PD-0332991
|
cell line: CUTL1
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: 1 uM PD-0332991 for 15hrs
|
CUTL1_PD-1
|
| Sample_geo_accession | GSM998560
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998560/suppl/GSM998560_CUTL1_PD-1.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998561 | GPL570 |
|
CUTL1 PD-0332991 treated replicate2
|
CUTL1_PD-0332991
|
cell line: CUTL1
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: 1 uM PD-0332991 for 15hrs
|
CUTL1_PD-2
|
| Sample_geo_accession | GSM998561
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998561/suppl/GSM998561_CUTL1_PD-2.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998562 | GPL570 |
|
DND41 DMSO treated replicate 1
|
DND41_DMSO
|
cell line: DND41
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: DMSO for 15hrs
|
DND41_NT-1
|
| Sample_geo_accession | GSM998562
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998562/suppl/GSM998562_DND41_NT-1.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998563 | GPL570 |
|
DND41 DMSO treated replicate 2
|
DND41_DMSO
|
cell line: DND41
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: DMSO for 15hrs
|
DND41_NT-2
|
| Sample_geo_accession | GSM998563
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998563/suppl/GSM998563_DND41_NT-2.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998564 | GPL570 |
|
DND41 PD-0332991 treated replicate1
|
DND41_PD-0332991
|
cell line: DND41
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: 1 uM PD-0332991 for 15hrs
|
DND41_PD-1
|
| Sample_geo_accession | GSM998564
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998564/suppl/GSM998564_DND41_PD-1.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998565 | GPL570 |
|
DND41 PD-0332991 treated replicate2
|
DND41_PD-0332991
|
cell line: DND41
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: 1 uM PD-0332991 for 15hrs
|
DND41_PD-2
|
| Sample_geo_accession | GSM998565
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998565/suppl/GSM998565_DND41_PD-2.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998566 | GPL570 |
|
Jurkat DMSO treated replicate 1
|
Jurkat_DMSO
|
cell line: Jurkat
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: DMSO for 15hrs
|
Jurkat_NT-1
|
| Sample_geo_accession | GSM998566
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998566/suppl/GSM998566_Jurkat_NT-1.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998567 | GPL570 |
|
Jurkat DMSO treated replicate 2
|
Jurkat_DMSO
|
cell line: Jurkat
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: DMSO for 15hrs
|
Jurkat_NT-2
|
| Sample_geo_accession | GSM998567
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998567/suppl/GSM998567_Jurkat_NT-2.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998568 | GPL570 |
|
Jurkat PD-0332991 treated replicate1
|
Jurkat_PD-0332991
|
cell line: Jurkat
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: 1 uM PD-0332991 for 15hrs
|
Jurkat_PD-1
|
| Sample_geo_accession | GSM998568
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998568/suppl/GSM998568_Jurkat_PD-1.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
GSM998569 | GPL570 |
|
Jurkat PD-0332991 treated replicate2
|
Jurkat_PD-0332991
|
cell line: Jurkat
cell type: T cell acute lymphoblastic leukemia cells (T-ALL)
treated with: 1 uM PD-0332991 for 15hrs
|
Jurkat_PD-2
|
| Sample_geo_accession | GSM998569
| | Sample_status | Public on Dec 13 2012
| | Sample_submission_date | Sep 05 2012
| | Sample_last_update_date | Dec 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Treated with DMSO or 1 uM PD-0332991 for 15 hours prior to RNA extraction
| | Sample_growth_protocol_ch1 | Grown in RPMI + 10% FCS + 1% Glutamax + 1% Pen/Strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2.
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix).
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Camille,,Lobry
| | Sample_contact_email | camille.lobry@nyumc.org
| | Sample_contact_laboratory | Aifantis
| | Sample_contact_department | Cancer Institute/Pathology
| | Sample_contact_institute | NYULMC
| | Sample_contact_address | 550 First Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998569/suppl/GSM998569_Jurkat_PD-2.CEL.gz
| | Sample_series_id | GSE40635
| | Sample_data_row_count | 54675
| | |
|
| |
| |
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