Search results for the GEO ID: GSE40647  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM998828 | GPL1261 |
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WTCD8aDC
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WTCD8aDC
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strain: C57BL/6
genotype/variation: wild-type
cell type: CD8alpha dendritic cells
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| Sample_geo_accession | GSM998828
| | Sample_status | Public on Sep 30 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were analyzed at steady-state. Cells were harvested from spleens following digestion with Collagenase B (Roche) and Dnase I (Sigma-Aldrich). Dendritic cells were then positively selected with CD11c MicroBeads (Miltenyi). All enriched samples were sorted to >90% purity on BD FACSAria II.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with NucleoSpin RNA XS kit (Macherey-Nagel) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | Hybed onto Mouse 430 2.0 (Affymetrix)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed using Arraystar software (DNASTAR) with Quantile RMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,M,Murphy
| | Sample_contact_email | kmurphy@wustl.edu
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 660 S. Euclid
| | Sample_contact_city | St. Louis
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998828/suppl/GSM998828_WTCD8aDC.CEL.gz
| | Sample_series_id | GSE40647
| | Sample_data_row_count | 45037
| | |
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GSM998829 | GPL1261 |
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WTCD8aDC_IL12
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WTCD8aDC_IL12
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strain: C57BL/6
genotype/variation: wild-type
cell type: CD8alpha dendritic cells
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| Sample_geo_accession | GSM998829
| | Sample_status | Public on Sep 30 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were analyzed at steady-state. Cells were harvested from spleens following digestion with Collagenase B (Roche) and Dnase I (Sigma-Aldrich). Dendritic cells were then positively selected with CD11c MicroBeads (Miltenyi). All enriched samples were sorted to >90% purity on BD FACSAria II.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with NucleoSpin RNA XS kit (Macherey-Nagel) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | Hybed onto Mouse 430 2.0 (Affymetrix)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed using Arraystar software (DNASTAR) with Quantile RMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,M,Murphy
| | Sample_contact_email | kmurphy@wustl.edu
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 660 S. Euclid
| | Sample_contact_city | St. Louis
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998829/suppl/GSM998829_WTCD8aDC_IL12.CEL.gz
| | Sample_series_id | GSE40647
| | Sample_data_row_count | 45037
| | |
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GSM998830 | GPL1261 |
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KOCD8aDC
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KOCD8aDC
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strain: C57BL/6
genotype/variation: Batf3-/-
cell type: CD8alpha dendritic cells
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|
| Sample_geo_accession | GSM998830
| | Sample_status | Public on Sep 30 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were analyzed at steady-state. Cells were harvested from spleens following digestion with Collagenase B (Roche) and Dnase I (Sigma-Aldrich). Dendritic cells were then positively selected with CD11c MicroBeads (Miltenyi). All enriched samples were sorted to >90% purity on BD FACSAria II.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with NucleoSpin RNA XS kit (Macherey-Nagel) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | Hybed onto Mouse 430 2.0 (Affymetrix)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed using Arraystar software (DNASTAR) with Quantile RMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,M,Murphy
| | Sample_contact_email | kmurphy@wustl.edu
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 660 S. Euclid
| | Sample_contact_city | St. Louis
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998830/suppl/GSM998830_KOCD8aDC.CEL.gz
| | Sample_series_id | GSE40647
| | Sample_data_row_count | 45037
| | |
|
GSM998831 | GPL1261 |
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KOCD8aDC_IL12
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KOCD8aDC_IL12
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strain: C57BL/6
genotype/variation: Batf3-/-
cell type: CD8alpha dendritic cells
|
|
| Sample_geo_accession | GSM998831
| | Sample_status | Public on Sep 30 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 30 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Mice were analyzed at steady-state. Cells were harvested from spleens following digestion with Collagenase B (Roche) and Dnase I (Sigma-Aldrich). Dendritic cells were then positively selected with CD11c MicroBeads (Miltenyi). All enriched samples were sorted to >90% purity on BD FACSAria II.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with NucleoSpin RNA XS kit (Macherey-Nagel) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 3' IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | Hybed onto Mouse 430 2.0 (Affymetrix)
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Data was analyzed using Arraystar software (DNASTAR) with Quantile RMA normalization
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kenneth,M,Murphy
| | Sample_contact_email | kmurphy@wustl.edu
| | Sample_contact_institute | HHMI
| | Sample_contact_address | 660 S. Euclid
| | Sample_contact_city | St. Louis
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998831/suppl/GSM998831_KOCD8aDC_IL12.CEL.gz
| | Sample_series_id | GSE40647
| | Sample_data_row_count | 45037
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