Search results for the GEO ID: GSE40655 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM998918 | GPL1261 |
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nTreg Foxo1 KO, Constitutively Active Foxo1
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nTreg cells, Foxo1KO, Foxo1AAA mice
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strain: C57BL/6
genotype/variation: Foxo1KO, Foxo1AAA mice
cell type: Regulatory T cells
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Treg_CA_KO
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Sample_geo_accession | GSM998918
| Sample_status | Public on Sep 07 2012
| Sample_submission_date | Sep 06 2012
| Sample_last_update_date | Sep 07 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA was extracted from cells using miRNeasy kit from Qiagen for RNA extraction
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse 430 2.0 genome arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | Arrays were scanned using GeneChip Affymetrix scanner 3000 7G
| Sample_data_processing | The data was analyzed using the RMA and limma methods to assess differential expression [R version 2.15; packages: affy 1.34.0, affyPLM 1.32.0, limma 3.12.1, mouse_4302.db 2.7.1, biomaRt 2.12.0]
| Sample_platform_id | GPL1261
| Sample_contact_name | Willey,,Liao
| Sample_contact_laboratory | Zhang
| Sample_contact_department | Computational Biology
| Sample_contact_institute | Cold Spring Harbor Laboratory
| Sample_contact_address | 1 Bungtown Road
| Sample_contact_city | Cold Spring Harbor
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 11724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998918/suppl/GSM998918_nTreg_Foxo1KO_Foxo1CA_Mouse430_2.CEL.gz
| Sample_series_id | GSE40655
| Sample_series_id | GSE40657
| Sample_data_row_count | 45101
| |
|
GSM998919 | GPL1261 |
|
nTreg, Constitutively Active Foxo1
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nTreg cells, Foxo1AAA mice
|
strain: C57BL/6
genotype/variation: Foxo1AAA mice
cell type: Regulatory T cells
|
Treg_CA_WT
|
Sample_geo_accession | GSM998919
| Sample_status | Public on Sep 07 2012
| Sample_submission_date | Sep 06 2012
| Sample_last_update_date | Sep 07 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA was extracted from cells using miRNeasy kit from Qiagen for RNA extraction
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse 430 2.0 genome arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | Arrays were scanned using GeneChip Affymetrix scanner 3000 7G
| Sample_data_processing | The data was analyzed using the RMA and limma methods to assess differential expression [R version 2.15; packages: affy 1.34.0, affyPLM 1.32.0, limma 3.12.1, mouse_4302.db 2.7.1, biomaRt 2.12.0]
| Sample_platform_id | GPL1261
| Sample_contact_name | Willey,,Liao
| Sample_contact_laboratory | Zhang
| Sample_contact_department | Computational Biology
| Sample_contact_institute | Cold Spring Harbor Laboratory
| Sample_contact_address | 1 Bungtown Road
| Sample_contact_city | Cold Spring Harbor
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 11724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998919/suppl/GSM998919_nTreg_Foxo1CA_Mouse430_2.CEL.gz
| Sample_series_id | GSE40655
| Sample_series_id | GSE40657
| Sample_data_row_count | 45101
| |
|
GSM998920 | GPL1261 |
|
nTreg Foxo1 KO, rep1
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nTreg cells Foxo1KO
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strain: C57BL/6
genotype/variation: Foxo1KO
cell type: Regulatory T cells
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Treg_FOXO1_rep1
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Sample_geo_accession | GSM998920
| Sample_status | Public on Sep 07 2012
| Sample_submission_date | Sep 06 2012
| Sample_last_update_date | Sep 07 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA was extracted from cells using miRNeasy kit from Qiagen for RNA extraction
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse 430 2.0 genome arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | Arrays were scanned using GeneChip Affymetrix scanner 3000 7G
| Sample_data_processing | The data was analyzed using the RMA and limma methods to assess differential expression [R version 2.15; packages: affy 1.34.0, affyPLM 1.32.0, limma 3.12.1, mouse_4302.db 2.7.1, biomaRt 2.12.0]
| Sample_platform_id | GPL1261
| Sample_contact_name | Willey,,Liao
| Sample_contact_laboratory | Zhang
| Sample_contact_department | Computational Biology
| Sample_contact_institute | Cold Spring Harbor Laboratory
| Sample_contact_address | 1 Bungtown Road
| Sample_contact_city | Cold Spring Harbor
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 11724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998920/suppl/GSM998920_nTreg_Foxo1KO_Mouse430_2.rep1.CEL.gz
| Sample_series_id | GSE40655
| Sample_series_id | GSE40657
| Sample_data_row_count | 45101
| |
|
GSM998921 | GPL1261 |
|
nTreg Foxo1 KO, rep2
|
nTreg cells Foxo1KO
|
strain: C57BL/6
genotype/variation: Foxo1KO
cell type: Regulatory T cells
|
Treg_FOXO1_rep2
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Sample_geo_accession | GSM998921
| Sample_status | Public on Sep 07 2012
| Sample_submission_date | Sep 06 2012
| Sample_last_update_date | Sep 07 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA was extracted from cells using miRNeasy kit from Qiagen for RNA extraction
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse 430 2.0 genome arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | Arrays were scanned using GeneChip Affymetrix scanner 3000 7G
| Sample_data_processing | The data was analyzed using the RMA and limma methods to assess differential expression [R version 2.15; packages: affy 1.34.0, affyPLM 1.32.0, limma 3.12.1, mouse_4302.db 2.7.1, biomaRt 2.12.0]
| Sample_platform_id | GPL1261
| Sample_contact_name | Willey,,Liao
| Sample_contact_laboratory | Zhang
| Sample_contact_department | Computational Biology
| Sample_contact_institute | Cold Spring Harbor Laboratory
| Sample_contact_address | 1 Bungtown Road
| Sample_contact_city | Cold Spring Harbor
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 11724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998921/suppl/GSM998921_nTreg_Foxo1KO_Mouse430_2.rep2.CEL.gz
| Sample_series_id | GSE40655
| Sample_series_id | GSE40657
| Sample_data_row_count | 45101
| |
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GSM998922 | GPL1261 |
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nTreg Foxo1 WT, rep1
|
nTreg cells WT
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strain: C57BL/6
genotype/variation: Wild type
cell type: Regulatory T cells
|
Treg_WT1_rep1
|
Sample_geo_accession | GSM998922
| Sample_status | Public on Sep 07 2012
| Sample_submission_date | Sep 06 2012
| Sample_last_update_date | Sep 07 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA was extracted from cells using miRNeasy kit from Qiagen for RNA extraction
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse 430 2.0 genome arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | Arrays were scanned using GeneChip Affymetrix scanner 3000 7G
| Sample_data_processing | The data was analyzed using the RMA and limma methods to assess differential expression [R version 2.15; packages: affy 1.34.0, affyPLM 1.32.0, limma 3.12.1, mouse_4302.db 2.7.1, biomaRt 2.12.0]
| Sample_platform_id | GPL1261
| Sample_contact_name | Willey,,Liao
| Sample_contact_laboratory | Zhang
| Sample_contact_department | Computational Biology
| Sample_contact_institute | Cold Spring Harbor Laboratory
| Sample_contact_address | 1 Bungtown Road
| Sample_contact_city | Cold Spring Harbor
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 11724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998922/suppl/GSM998922_nTreg_Foxo1WT_Mouse430_2.rep1.CEL.gz
| Sample_series_id | GSE40655
| Sample_series_id | GSE40657
| Sample_data_row_count | 45101
| |
|
GSM998923 | GPL1261 |
|
nTreg Foxo1 WT, rep2
|
nTreg cells WT
|
strain: C57BL/6
genotype/variation: Wild type
cell type: Regulatory T cells
|
Treg_WT1_rep2
|
Sample_geo_accession | GSM998923
| Sample_status | Public on Sep 07 2012
| Sample_submission_date | Sep 06 2012
| Sample_last_update_date | Sep 07 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | total RNA was extracted from cells using miRNeasy kit from Qiagen for RNA extraction
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse 430 2.0 genome arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| Sample_scan_protocol | Arrays were scanned using GeneChip Affymetrix scanner 3000 7G
| Sample_data_processing | The data was analyzed using the RMA and limma methods to assess differential expression [R version 2.15; packages: affy 1.34.0, affyPLM 1.32.0, limma 3.12.1, mouse_4302.db 2.7.1, biomaRt 2.12.0]
| Sample_platform_id | GPL1261
| Sample_contact_name | Willey,,Liao
| Sample_contact_laboratory | Zhang
| Sample_contact_department | Computational Biology
| Sample_contact_institute | Cold Spring Harbor Laboratory
| Sample_contact_address | 1 Bungtown Road
| Sample_contact_city | Cold Spring Harbor
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 11724
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998923/suppl/GSM998923_nTreg_Foxo1WT_Mouse430_2.rep2.CEL.gz
| Sample_series_id | GSE40655
| Sample_series_id | GSE40657
| Sample_data_row_count | 45101
| |
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