Search results for the GEO ID: GSE40666  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM998968 | GPL339 |
|
WT at D0, untreated, biological rep1
|
CD8 T cells from WT mice
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from WT CD8 T cells
|
| Sample_geo_accession | GSM998968
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998968/suppl/GSM998968_WT_0_B5.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998969 | GPL339 |
|
WT at D0, untreated, biological rep2
|
CD8 T cells from WT mice
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from WT CD8 T cells
|
| Sample_geo_accession | GSM998969
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998969/suppl/GSM998969_WT_0_B7.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998970 | GPL339 |
|
WT at D0, untreated, biological rep3
|
CD8 T cells from WT mice
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from WT CD8 T cells
|
| Sample_geo_accession | GSM998970
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998970/suppl/GSM998970_WT_0_1.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998971 | GPL339 |
|
WT at D0, IFNa treated, biological rep1
|
CD8 T cells from WT mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from WT CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998971
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998971/suppl/GSM998971_WT_0_IFN_B6.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998972 | GPL339 |
|
WT at D0, IFNa treated, biological rep2
|
CD8 T cells from WT mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from WT CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998972
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998972/suppl/GSM998972_WT_0_IFN_B8.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998973 | GPL339 |
|
WT at D0, IFNa treated, biological rep3
|
CD8 T cells from WT mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from WT CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998973
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998973/suppl/GSM998973_WT_0_IFN_2.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998974 | GPL339 |
|
WT at D0, IFNa treated, biological rep4
|
CD8 T cells from WT mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from WT CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998974
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998974/suppl/GSM998974_WT_0_IFN_2A.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998975 | GPL339 |
|
WT at D8, untreated, biological rep1
|
CD8 T cells from WT mice after 8 days of LCMV infection
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: after 8 days of LCMV infection
|
Gene expression data from WT CD8 T cells after 8 days of LCMV infection
|
| Sample_geo_accession | GSM998975
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998975/suppl/GSM998975_WT_8_p2.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998976 | GPL339 |
|
WT at D8, untreated, biological rep2
|
CD8 T cells from WT mice after 8 days of LCMV infection
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: after 8 days of LCMV infection
|
Gene expression data from WT CD8 T cells after 8 days of LCMV infection
|
| Sample_geo_accession | GSM998976
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998976/suppl/GSM998976_WT_8_p6.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998977 | GPL339 |
|
WT at D8, untreated, biological rep3
|
CD8 T cells from WT mice after 8 days of LCMV infection
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: after 8 days of LCMV infection
|
Gene expression data from WT CD8 T cells after 8 days of LCMV infection
|
| Sample_geo_accession | GSM998977
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998977/suppl/GSM998977_WT_8_5.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998978 | GPL339 |
|
WT at D8, IFNa treated, biological rep1
|
CD8 T cells from WT mice after 8 days of LCMV infection treated with IFNalpha for 90
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: after 8 days of LCMV infection and treated with IFNalpha for 90 minutes
|
Gene expression data from WT CD8 T cells after 8 days of LCMV infection treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998978
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998978/suppl/GSM998978_WT_8_IFN_P3.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998979 | GPL339 |
|
WT at D8, IFNa treated, biological rep2
|
CD8 T cells from WT mice after 8 days of LCMV infection treated with IFNalpha for 91
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: after 8 days of LCMV infection and treated with IFNalpha for 90 minutes
|
Gene expression data from WT CD8 T cells after 8 days of LCMV infection treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998979
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998979/suppl/GSM998979_WT_8_IFN_P7.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998980 | GPL339 |
|
WT at D8, IFNa treated, biological rep3
|
CD8 T cells from WT mice after 8 days of LCMV infection treated with IFNalpha for 92
|
tissue: CD8 T cells
genotype: WT
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: after 8 days of LCMV infection and treated with IFNalpha for 90 minutes
|
Gene expression data from WT CD8 T cells after 8 days of LCMV infection treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998980
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998980/suppl/GSM998980_WT_8_IFN_6.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998981 | GPL339 |
|
STAT1 KO at D0, untreated, biological rep1
|
CD8 T cells from STAT1-deficient mice
|
tissue: CD8 T cells
genotype: STAT1 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from STAT1 KO CD8 T cells
|
| Sample_geo_accession | GSM998981
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998981/suppl/GSM998981_ST1_0_P8.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998982 | GPL339 |
|
STAT1 KO at D0, untreated, biological rep2
|
CD8 T cells from STAT1-deficient mice
|
tissue: CD8 T cells
genotype: STAT1 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from STAT1 KO CD8 T cells
|
| Sample_geo_accession | GSM998982
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998982/suppl/GSM998982_ST1_0_B1.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998983 | GPL339 |
|
STAT1 KO at D0, untreated, biological rep3
|
CD8 T cells from STAT1-deficient mice
|
tissue: CD8 T cells
genotype: STAT1 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from STAT1 KO CD8 T cells
|
| Sample_geo_accession | GSM998983
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998983/suppl/GSM998983_ST1_0_5A.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998984 | GPL339 |
|
STAT1 KO at D0, IFNa treated, biological rep1
|
CD8 T cells from STAT1-deficient mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: STAT1 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from STAT1 KO CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998984
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998984/suppl/GSM998984_ST1_0_IFN_P9.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998985 | GPL339 |
|
STAT1 KO at D0, IFNa treated, biological rep2
|
CD8 T cells from STAT1-deficient mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: STAT1 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from STAT1 KO CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998985
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998985/suppl/GSM998985_ST1_0_IFN_B2.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998986 | GPL339 |
|
STAT1 KO at D0, IFNa treated, biological rep3
|
CD8 T cells from STAT1-deficient mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: STAT1 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from STAT1 KO CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998986
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998986/suppl/GSM998986_ST1_0_IFN_6A.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998987 | GPL339 |
|
STAT4 KO at D0, untreated, biological rep1
|
CD8 T cells from STAT4-deficient mice
|
tissue: CD8 T cells
genotype: STAT4 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from STAT4 KO CD8 T cells
|
| Sample_geo_accession | GSM998987
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998987/suppl/GSM998987_ST4_0_B3.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998988 | GPL339 |
|
STAT4 KO at D0, untreated, biological rep2
|
CD8 T cells from STAT4-deficient mice
|
tissue: CD8 T cells
genotype: STAT4 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from STAT4 KO CD8 T cells
|
| Sample_geo_accession | GSM998988
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998988/suppl/GSM998988_ST4_0_C1.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998989 | GPL339 |
|
STAT4 KO at D0, untreated, biological rep3
|
CD8 T cells from STAT4-deficient mice
|
tissue: CD8 T cells
genotype: STAT4 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: none
|
Gene expression data from STAT4 KO CD8 T cells
|
| Sample_geo_accession | GSM998989
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998989/suppl/GSM998989_ST4_0_ST4A.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998990 | GPL339 |
|
STAT4 KO at D0, IFNa treated, biological rep1
|
CD8 T cells from STAT4-deficient mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: STAT4 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from STAT4 KO CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998990
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998990/suppl/GSM998990_ST4_0_IFN_B4.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
| | |
|
GSM998991 | GPL339 |
|
STAT4 KO at D0, IFNa treated, biological rep2
|
CD8 T cells from STAT4-deficient mice treated with IFNalpha for 90 minutes
|
tissue: CD8 T cells
genotype: STAT4 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
|
Gene expression data from STAT4 KO CD8 T cells treated with IFNalpha for 90 minutes
|
| Sample_geo_accession | GSM998991
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998991/suppl/GSM998991_ST4_0_IFN_C2.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
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GSM998992 | GPL339 |
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STAT4 KO at D0, IFNa treated, biological rep3
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CD8 T cells from STAT4-deficient mice treated with IFNalpha for 90 minutes
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tissue: CD8 T cells
genotype: STAT4 KO
strain: C57BL/6 (B6)
age: 8 to 12 wks of age
treatment: IFNalpha for 90 minutes
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Gene expression data from STAT4 KO CD8 T cells treated with IFNalpha for 90 minutes
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| Sample_geo_accession | GSM998992
| | Sample_status | Public on Sep 07 2012
| | Sample_submission_date | Sep 06 2012
| | Sample_last_update_date | Sep 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | CD8 T cells were isolated by negative selection using MACS enrichment kits and the program DepleteS on the AutoMACS instrument (Milteny Biotec). Purity was >85%.RNA was then extracted with the RNAeasy kit from Qiagen using on column digestion with DNAse I (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_hyb_protocol | Preparation of cRNA and hybridization to the Mouse 430A array were performed as described by the manufacturer (Affymetrix).
| | Sample_scan_protocol | Stained chips were read and analyzed using an Affymetrix 6 GeneChip scanner. Data acquisition was carried out at Brown and Yale Universities.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | M. Pilar,,Gil
| | Sample_contact_institute | Brown University
| | Sample_contact_address | 75 Waterman St
| | Sample_contact_city | Providence
| | Sample_contact_state | Rhode Island
| | Sample_contact_zip/postal_code | 02906
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM998nnn/GSM998992/suppl/GSM998992_ST4_0_IFN_ST4B.CEL.gz
| | Sample_series_id | GSE40666
| | Sample_data_row_count | 15409
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