Search results for the GEO ID: GSE40685  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM999190 | GPL1261 |
|
TN_rep1
|
Naïve Foxp3-negative CD4+ T cells
|
cell type: Naïve Foxp3-negative CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999190
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999190/suppl/GSM999190_RS_RTn1_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999191 | GPL1261 |
|
TN_rep2
|
Naïve Foxp3-negative CD4+ T cells
|
cell type: Naïve Foxp3-negative CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999191
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999191/suppl/GSM999191_RS_RTn2_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999192 | GPL1261 |
|
TN_rep3
|
Naïve Foxp3-negative CD4+ T cells
|
cell type: Naïve Foxp3-negative CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999192
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999192/suppl/GSM999192_RS_RTn3_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999193 | GPL1261 |
|
Treg_rep1
|
Foxp3-positive CD4+ T cells
|
cell type: Foxp3-positive CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999193
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999193/suppl/GSM999193_RS_Rtreg1_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999194 | GPL1261 |
|
Treg_rep2
|
Foxp3-positive CD4+ T cells
|
cell type: Foxp3-positive CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999194
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999194/suppl/GSM999194_RS_Rtreg2_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999195 | GPL1261 |
|
Treg_rep3
|
Foxp3-positive CD4+ T cells
|
cell type: Foxp3-positive CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999195
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999195/suppl/GSM999195_RS_Rtreg3_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999196 | GPL1261 |
|
Treg_rep4
|
Foxp3-positive CD4+ T cells
|
cell type: Foxp3-positive CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999196
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999196/suppl/GSM999196_RS_Rtreg4_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999197 | GPL1261 |
|
Treg_rep5
|
Foxp3-positive CD4+ T cells
|
cell type: Foxp3-positive CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999197
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999197/suppl/GSM999197_RS_Rtreg5_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999198 | GPL1261 |
|
GFPKO_rep1
|
GFP+ CD4+ T cells from Foxp3GFPKO/WT mice
|
cell type: GFP+ CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999198
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999198/suppl/GSM999198_RS_KIKOhet1_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999199 | GPL1261 |
|
GFPKO_rep2
|
GFP+ CD4+ T cells from Foxp3GFPKO/WT mice
|
cell type: GFP+ CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999199
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999199/suppl/GSM999199_RS_KIKOhet2_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
|
GSM999200 | GPL1261 |
|
GFPKO_rep3
|
GFP+ CD4+ T cells from Foxp3GFPKO/WT mice
|
cell type: GFP+ CD4+ T cells
|
Spleen and Lymph Node sorted cells
|
| Sample_geo_accession | GSM999200
| | Sample_status | Public on Sep 28 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells were harvested from 6-8wk old mice. T cells were purified by Dynal CD4 T cell positive selection kit and double sorted on GFP, etc.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using Trizol according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix protocol
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | Expression arrays were normalized in Bioconductor, using RMA and median polish settings in the expresso package.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Arvey
| | Sample_contact_email | aarvey@cbio.mskcc.org
| | Sample_contact_institute | Memorial Sloan-Kettering Cancer Center
| | Sample_contact_address | 415 E 68th St ZRC 1131
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999200/suppl/GSM999200_RS_KIKOhet3_Mouse430_2.CEL.gz
| | Sample_series_id | GSE40685
| | Sample_series_id | GSE40686
| | Sample_data_row_count | 45101
| | |
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