Search results for the GEO ID: GSE40709  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM999550 | GPL570 |
|
Human Islets 1
|
Human Islets from Donor
|
cell type: Pancreatic Islets
|
Human Islets 1
Adult Human Islets
|
| Sample_geo_accession | GSM999550
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Jun 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999550/suppl/GSM999550_Human_Islets_1.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
|
GSM999551 | GPL570 |
|
Human Islets 2
|
Human Islets from Donor
|
cell type: Pancreatic Islets
|
Human Islets 2
Adult Human Islets
|
| Sample_geo_accession | GSM999551
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Jun 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999551/suppl/GSM999551_Human_Islets_2.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
|
GSM999552 | GPL570 |
|
Human Islets 3
|
Human Islets from Donor
|
cell type: Pancreatic Islets
|
Human Islets 3
Adult Human Islets
|
| Sample_geo_accession | GSM999552
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Jun 19 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999552/suppl/GSM999552_Human_Islets_3.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
|
GSM999553 | GPL570 |
|
INSGFP+ 1
|
FACS sorted Insulin-positive hESC-derived cells
|
cell line background: HES3
genotype/variation: expressing GFP under the insulin promoter
cell type: hESC-derived beta-like cells
cell population: insulin-positive
|
INS:GFP+ 1
d22-differentiated hESC according to the 'Nostro Protocol', FACS sorted population
|
| Sample_geo_accession | GSM999553
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999553/suppl/GSM999553_INSGFP+_1.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
|
GSM999554 | GPL570 |
|
INSGFP+ 2
|
FACS sorted Insulin-positive hESC-derived cells
|
cell line background: HES3
genotype/variation: expressing GFP under the insulin promoter
cell type: hESC-derived beta-like cells
cell population: insulin-positive
|
INS:GFP+ 2
d22-differentiated hESC according to the 'Nostro Protocol', FACS sorted population
|
| Sample_geo_accession | GSM999554
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999554/suppl/GSM999554_INSGFP+_2.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
|
GSM999555 | GPL570 |
|
INSGFP+ 3
|
FACS sorted Insulin-positive hESC-derived cells
|
cell line background: HES3
genotype/variation: expressing GFP under the insulin promoter
cell type: hESC-derived beta-like cells
cell population: insulin-positive
|
INS:GFP+ 3
d22-differentiated hESC according to the 'Nostro Protocol', FACS sorted population
|
| Sample_geo_accession | GSM999555
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999555/suppl/GSM999555_INSGFP+_3.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
|
GSM999556 | GPL570 |
|
INSGFP- 1
|
FACS sorted Insulin-negative hESC-derived cells
|
cell line background: HES3
genotype/variation: expressing GFP under the insulin promoter
cell type: hESC-derived beta-like cells
cell population: insulin-negative
|
INS:GFP- 1
d22-differentiated hESC according to the 'Nostro Protocol', FACS sorted population
|
| Sample_geo_accession | GSM999556
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999556/suppl/GSM999556_INSGFP-_1.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
|
GSM999557 | GPL570 |
|
INSGFP- 2
|
FACS sorted Insulin-negative hESC-derived cells
|
cell line background: HES3
genotype/variation: expressing GFP under the insulin promoter
cell type: hESC-derived beta-like cells
cell population: insulin-negative
|
INS:GFP- 2
d22-differentiated hESC according to the 'Nostro Protocol', FACS sorted population
|
| Sample_geo_accession | GSM999557
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999557/suppl/GSM999557_INSGFP-_2.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
|
GSM999558 | GPL570 |
|
INSGFP- 3
|
FACS sorted Insulin-negative hESC-derived cells
|
cell line background: HES3
genotype/variation: expressing GFP under the insulin promoter
cell type: hESC-derived beta-like cells
cell population: insulin-negative
|
INS:GFP- 3
d22-differentiated hESC according to the 'Nostro Protocol', FACS sorted population
|
| Sample_geo_accession | GSM999558
| | Sample_status | Public on Sep 09 2012
| | Sample_submission_date | Sep 07 2012
| | Sample_last_update_date | Sep 09 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | As described in Nostro et al., Development, 2011
| | Sample_growth_protocol_ch1 | hESC differentiated according to the 'Nostro Protocol' (Development, 2011) to day 22. Human Islets obtained from the Clinical Islet Laboratory, University of Alberta and hand-picked.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy Plus Mini Kit
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the standard Affymetrix protocol from 200ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 GeneChip. EukGE-WSv4_450 was used to stain and wash the arrays.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | The data were analyzed with Affymetrix Expression Console (Version 1.1) using Affymetrix default analysis settings and RMA as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Michael,,Wheeler
| | Sample_contact_department | Physiology
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | 1 King's College Circle
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S1A8
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM999nnn/GSM999558/suppl/GSM999558_INSGFP-_3.CEL.gz
| | Sample_series_id | GSE40709
| | Sample_data_row_count | 52991
| | |
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