Search results for the GEO ID: GSE40830  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1002641 | GPL570 |
|
megakaryocytes at day0, biological rep A
|
umbilical cord blood
|
cell type: CD34-CD41+CD61+CD45- megakaryocytes
time: 0 day in culture
|
|
| Sample_geo_accession | GSM1002641
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Sep 12 2012
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD34-CD33+CD13+ colony forming unit-monocytes (CFU-M) and CD34-CD41+CD61+CD45- megakaryocytes were sorted from pooled fresh cord blood samples on BD FACS Aria (CD34: PE; CD33: APC; CD13: PERCP; CD41: PE; CD61: FITC; CD45: APC. All antibodies were purchased from BD BioScience)
| | Sample_growth_protocol_ch1 | Lineage negative cells derived from fresh human umbilical cord blood were cultured in serum free condition supplemented with SCF, THPO and FLT3LG.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy® Mini kits (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 3000 machine
| | Sample_data_processing | Gene expression values were normalized using the justRMA function of the affy package from BioConductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wenlian,,Qiao
| | Sample_contact_email | wendy.qiao@utoronto.ca
| | Sample_contact_phone | 1-416 978 1089
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | Room 1110, 160 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S 3E1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1002nnn/GSM1002641/suppl/GSM1002641_A_d0_mega.CEL.gz
| | Sample_series_id | GSE40830
| | Sample_series_id | GSE40831
| | Sample_data_row_count | 54613
| | |
|
GSM1002642 | GPL570 |
|
megakaryocytes at day0, biological rep B
|
umbilical cord blood
|
cell type: CD34-CD41+CD61+CD45- megakaryocytes
time: 0 day in culture
|
|
| Sample_geo_accession | GSM1002642
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Sep 12 2012
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD34-CD33+CD13+ colony forming unit-monocytes (CFU-M) and CD34-CD41+CD61+CD45- megakaryocytes were sorted from pooled fresh cord blood samples on BD FACS Aria (CD34: PE; CD33: APC; CD13: PERCP; CD41: PE; CD61: FITC; CD45: APC. All antibodies were purchased from BD BioScience)
| | Sample_growth_protocol_ch1 | Lineage negative cells derived from fresh human umbilical cord blood were cultured in serum free condition supplemented with SCF, THPO and FLT3LG.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy® Mini kits (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 3000 machine
| | Sample_data_processing | Gene expression values were normalized using the justRMA function of the affy package from BioConductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wenlian,,Qiao
| | Sample_contact_email | wendy.qiao@utoronto.ca
| | Sample_contact_phone | 1-416 978 1089
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | Room 1110, 160 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S 3E1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1002nnn/GSM1002642/suppl/GSM1002642_B_d0_mega.CEL.gz
| | Sample_series_id | GSE40830
| | Sample_series_id | GSE40831
| | Sample_data_row_count | 54613
| | |
|
GSM1002643 | GPL570 |
|
megakaryocytes at day4, biological rep A
|
Lin- cell culture derived samples, day4
|
cell type: CD34-CD41+CD61+CD45- megakaryocytes
time: 4 days in culture
|
|
| Sample_geo_accession | GSM1002643
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Sep 12 2012
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD34-CD33+CD13+ colony forming unit-monocytes (CFU-M) and CD34-CD41+CD61+CD45- megakaryocytes were sorted from pooled fresh cord blood samples on BD FACS Aria (CD34: PE; CD33: APC; CD13: PERCP; CD41: PE; CD61: FITC; CD45: APC. All antibodies were purchased from BD BioScience)
| | Sample_growth_protocol_ch1 | Lineage negative cells derived from fresh human umbilical cord blood were cultured in serum free condition supplemented with SCF, THPO and FLT3LG.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy® Mini kits (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 3000 machine
| | Sample_data_processing | Gene expression values were normalized using the justRMA function of the affy package from BioConductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wenlian,,Qiao
| | Sample_contact_email | wendy.qiao@utoronto.ca
| | Sample_contact_phone | 1-416 978 1089
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | Room 1110, 160 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S 3E1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1002nnn/GSM1002643/suppl/GSM1002643_A_d4_mega.CEL.gz
| | Sample_series_id | GSE40830
| | Sample_series_id | GSE40831
| | Sample_data_row_count | 54613
| | |
|
GSM1002644 | GPL570 |
|
megakaryocytes at day4, biological rep B
|
Lin- cell culture derived samples, day4
|
cell type: CD34-CD41+CD61+CD45- megakaryocytes
time: 4 days in culture
|
|
| Sample_geo_accession | GSM1002644
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Sep 12 2012
| | Sample_last_update_date | Sep 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD34-CD33+CD13+ colony forming unit-monocytes (CFU-M) and CD34-CD41+CD61+CD45- megakaryocytes were sorted from pooled fresh cord blood samples on BD FACS Aria (CD34: PE; CD33: APC; CD13: PERCP; CD41: PE; CD61: FITC; CD45: APC. All antibodies were purchased from BD BioScience)
| | Sample_growth_protocol_ch1 | Lineage negative cells derived from fresh human umbilical cord blood were cultured in serum free condition supplemented with SCF, THPO and FLT3LG.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy® Mini kits (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 3000 machine
| | Sample_data_processing | Gene expression values were normalized using the justRMA function of the affy package from BioConductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wenlian,,Qiao
| | Sample_contact_email | wendy.qiao@utoronto.ca
| | Sample_contact_phone | 1-416 978 1089
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | Room 1110, 160 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S 3E1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1002nnn/GSM1002644/suppl/GSM1002644_B_d4_mega.CEL.gz
| | Sample_series_id | GSE40830
| | Sample_series_id | GSE40831
| | Sample_data_row_count | 54613
| | |
|
GSM1002645 | GPL570 |
|
CFU-M at day0, biological rep A
|
umbilical cord blood
|
cell type: CD34-CD33+CD13+ colony forming unit-monocytes
time: 0 day in culture
|
|
| Sample_geo_accession | GSM1002645
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Sep 12 2012
| | Sample_last_update_date | Oct 22 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD34-CD33+CD13+ colony forming unit-monocytes (CFU-M) and CD34-CD41+CD61+CD45- megakaryocytes were sorted from pooled fresh cord blood samples on BD FACS Aria (CD34: PE; CD33: APC; CD13: PERCP; CD41: PE; CD61: FITC; CD45: APC. All antibodies were purchased from BD BioScience)
| | Sample_growth_protocol_ch1 | Lineage negative cells derived from fresh human umbilical cord blood were cultured in serum free condition supplemented with SCF, THPO and FLT3LG.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy® Mini kits (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 3000 machine
| | Sample_data_processing | Gene expression values were normalized using the justRMA function of the affy package from BioConductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wenlian,,Qiao
| | Sample_contact_email | wendy.qiao@utoronto.ca
| | Sample_contact_phone | 1-416 978 1089
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | Room 1110, 160 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S 3E1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1002nnn/GSM1002645/suppl/GSM1002645_A_d0_mono.CEL.gz
| | Sample_series_id | GSE40830
| | Sample_series_id | GSE40831
| | Sample_data_row_count | 54613
| | |
|
GSM1002646 | GPL570 |
|
CFU-M at day0, biological rep B
|
umbilical cord blood
|
cell type: CD34-CD33+CD13+ colony forming unit-monocytes
time: 0 day in culture
|
|
| Sample_geo_accession | GSM1002646
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Sep 12 2012
| | Sample_last_update_date | Oct 22 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD34-CD33+CD13+ colony forming unit-monocytes (CFU-M) and CD34-CD41+CD61+CD45- megakaryocytes were sorted from pooled fresh cord blood samples on BD FACS Aria (CD34: PE; CD33: APC; CD13: PERCP; CD41: PE; CD61: FITC; CD45: APC. All antibodies were purchased from BD BioScience)
| | Sample_growth_protocol_ch1 | Lineage negative cells derived from fresh human umbilical cord blood were cultured in serum free condition supplemented with SCF, THPO and FLT3LG.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy® Mini kits (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 3000 machine
| | Sample_data_processing | Gene expression values were normalized using the justRMA function of the affy package from BioConductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wenlian,,Qiao
| | Sample_contact_email | wendy.qiao@utoronto.ca
| | Sample_contact_phone | 1-416 978 1089
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | Room 1110, 160 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S 3E1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1002nnn/GSM1002646/suppl/GSM1002646_B_d0_mono.CEL.gz
| | Sample_series_id | GSE40830
| | Sample_series_id | GSE40831
| | Sample_data_row_count | 54613
| | |
|
GSM1002647 | GPL570 |
|
CFU-M at day4, biological rep A
|
Lin- cell culture derived samples, day4
|
cell type: CD34-CD33+CD13+ colony forming unit-monocytes
time: 4 days in culture
|
|
| Sample_geo_accession | GSM1002647
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Sep 12 2012
| | Sample_last_update_date | Oct 22 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD34-CD33+CD13+ colony forming unit-monocytes (CFU-M) and CD34-CD41+CD61+CD45- megakaryocytes were sorted from pooled fresh cord blood samples on BD FACS Aria (CD34: PE; CD33: APC; CD13: PERCP; CD41: PE; CD61: FITC; CD45: APC. All antibodies were purchased from BD BioScience)
| | Sample_growth_protocol_ch1 | Lineage negative cells derived from fresh human umbilical cord blood were cultured in serum free condition supplemented with SCF, THPO and FLT3LG.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy® Mini kits (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 3000 machine
| | Sample_data_processing | Gene expression values were normalized using the justRMA function of the affy package from BioConductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wenlian,,Qiao
| | Sample_contact_email | wendy.qiao@utoronto.ca
| | Sample_contact_phone | 1-416 978 1089
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | Room 1110, 160 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S 3E1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1002nnn/GSM1002647/suppl/GSM1002647_A_d4_mono.CEL.gz
| | Sample_series_id | GSE40830
| | Sample_series_id | GSE40831
| | Sample_data_row_count | 54613
| | |
|
GSM1002648 | GPL570 |
|
CFU-M at day4, biological rep B
|
Lin- cell culture derived samples, day4
|
cell type: CD34-CD33+CD13+ colony forming unit-monocytes
time: 4 days in culture
|
|
| Sample_geo_accession | GSM1002648
| | Sample_status | Public on Sep 13 2012
| | Sample_submission_date | Sep 12 2012
| | Sample_last_update_date | Oct 22 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | CD34-CD33+CD13+ colony forming unit-monocytes (CFU-M) and CD34-CD41+CD61+CD45- megakaryocytes were sorted from pooled fresh cord blood samples on BD FACS Aria (CD34: PE; CD33: APC; CD13: PERCP; CD41: PE; CD61: FITC; CD45: APC. All antibodies were purchased from BD BioScience)
| | Sample_growth_protocol_ch1 | Lineage negative cells derived from fresh human umbilical cord blood were cultured in serum free condition supplemented with SCF, THPO and FLT3LG.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy® Mini kits (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene Chip Scanner 3000 machine
| | Sample_data_processing | Gene expression values were normalized using the justRMA function of the affy package from BioConductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wenlian,,Qiao
| | Sample_contact_email | wendy.qiao@utoronto.ca
| | Sample_contact_phone | 1-416 978 1089
| | Sample_contact_institute | University of Toronto
| | Sample_contact_address | Room 1110, 160 College Street
| | Sample_contact_city | Toronto
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | M5S 3E1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1002nnn/GSM1002648/suppl/GSM1002648_B_d4_mono.CEL.gz
| | Sample_series_id | GSE40830
| | Sample_series_id | GSE40831
| | Sample_data_row_count | 54613
| | |
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