Search results for the GEO ID: GSE40837 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1003005 | GPL570 |
|
Human breast tumor pre treatment, biological rep1
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Human breast tumor, pre sorafenib treatment
|
tissue: breast tumor
age: 44
er status: Positive
pgr status: Positive
endocrine agent: Tamoxifen
status on endocrine agent: Progressive disease (PD)
response to sorafenib: N/A
|
Gene expression data from human breast cancer
|
Sample_geo_accession | GSM1003005
| Sample_status | Public on Sep 13 2012
| Sample_submission_date | Sep 12 2012
| Sample_last_update_date | Sep 13 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | After day 1 biopsy on endocrine therapy alone, sorafenib was added and a second biopsy was obtained on day 28.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | 3' IVT express
| Sample_hyb_protocol | Standard Affymetrix protocol for 3' IVT design
| Sample_scan_protocol | Affymetrix Genechip 7G scanner
| Sample_data_processing | GCRMA, gcrma package (version 2.28.0) in R/Bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | Suleiman,,Massarweh
| Sample_contact_email | massarweh@uky.edu
| Sample_contact_institute | University of Kentucky and Markey Cancer Center
| Sample_contact_address | 800 Rose St., Cc452
| Sample_contact_city | Lexington
| Sample_contact_state | KY
| Sample_contact_zip/postal_code | 40536
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003005/suppl/GSM1003005_1-1_061011_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE40837
| Sample_data_row_count | 54675
| |
|
GSM1003006 | GPL570 |
|
Human breast tumor post treatment, biological rep1
|
Human breast tumor, post sorafenib treatment
|
tissue: breast tumor
age: 44
er status: Positive
pgr status: Positive
endocrine agent: Tamoxifen
status on endocrine agent: N/A
response to sorafenib: Stable disease (SD)
|
Gene expression data from human breast cancer
|
Sample_geo_accession | GSM1003006
| Sample_status | Public on Sep 13 2012
| Sample_submission_date | Sep 12 2012
| Sample_last_update_date | Sep 13 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | After day 1 biopsy on endocrine therapy alone, sorafenib was added and a second biopsy was obtained on day 28.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | 3' IVT express
| Sample_hyb_protocol | Standard Affymetrix protocol for 3' IVT design
| Sample_scan_protocol | Affymetrix Genechip 7G scanner
| Sample_data_processing | GCRMA, gcrma package (version 2.28.0) in R/Bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | Suleiman,,Massarweh
| Sample_contact_email | massarweh@uky.edu
| Sample_contact_institute | University of Kentucky and Markey Cancer Center
| Sample_contact_address | 800 Rose St., Cc452
| Sample_contact_city | Lexington
| Sample_contact_state | KY
| Sample_contact_zip/postal_code | 40536
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003006/suppl/GSM1003006_1-2_061011_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE40837
| Sample_data_row_count | 54675
| |
|
GSM1003007 | GPL570 |
|
Human breast tumor pre treatment, biological rep2
|
Human breast tumor, pre sorafenib treatment
|
tissue: breast tumor
age: 41
er status: Positive
pgr status: Positive
endocrine agent: Tamoxifen
status on endocrine agent: Stable disease (SD)
response to sorafenib: N/A
|
Gene expression data from human breast cancer
|
Sample_geo_accession | GSM1003007
| Sample_status | Public on Sep 13 2012
| Sample_submission_date | Sep 12 2012
| Sample_last_update_date | Sep 13 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | After day 1 biopsy on endocrine therapy alone, sorafenib was added and a second biopsy was obtained on day 28.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | 3' IVT express
| Sample_hyb_protocol | Standard Affymetrix protocol for 3' IVT design
| Sample_scan_protocol | Affymetrix Genechip 7G scanner
| Sample_data_processing | GCRMA, gcrma package (version 2.28.0) in R/Bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | Suleiman,,Massarweh
| Sample_contact_email | massarweh@uky.edu
| Sample_contact_institute | University of Kentucky and Markey Cancer Center
| Sample_contact_address | 800 Rose St., Cc452
| Sample_contact_city | Lexington
| Sample_contact_state | KY
| Sample_contact_zip/postal_code | 40536
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003007/suppl/GSM1003007_3-1_061011_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE40837
| Sample_data_row_count | 54675
| |
|
GSM1003008 | GPL570 |
|
Human breast tumor post treatment, biological rep2
|
Human breast tumor, post sorafenib treatment
|
tissue: breast tumor
age: 41
er status: Positive
pgr status: Positive
endocrine agent: Tamoxifen
status on endocrine agent: N/A
response to sorafenib: Stable disease (SD)
|
Gene expression data from human breast cancer
|
Sample_geo_accession | GSM1003008
| Sample_status | Public on Sep 13 2012
| Sample_submission_date | Sep 12 2012
| Sample_last_update_date | Sep 13 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | After day 1 biopsy on endocrine therapy alone, sorafenib was added and a second biopsy was obtained on day 28.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | 3' IVT express
| Sample_hyb_protocol | Standard Affymetrix protocol for 3' IVT design
| Sample_scan_protocol | Affymetrix Genechip 7G scanner
| Sample_data_processing | GCRMA, gcrma package (version 2.28.0) in R/Bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | Suleiman,,Massarweh
| Sample_contact_email | massarweh@uky.edu
| Sample_contact_institute | University of Kentucky and Markey Cancer Center
| Sample_contact_address | 800 Rose St., Cc452
| Sample_contact_city | Lexington
| Sample_contact_state | KY
| Sample_contact_zip/postal_code | 40536
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003008/suppl/GSM1003008_3-2_061011_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE40837
| Sample_data_row_count | 54675
| |
|
GSM1003009 | GPL570 |
|
Human breast tumor pre treatment, biological rep3
|
Human breast tumor, pre sorafenib treatment
|
tissue: breast tumor
age: 45
er status: Positive
pgr status: Positive
endocrine agent: Tamoxifen
status on endocrine agent: Progressive disease (PD)
response to sorafenib: N/A
|
Gene expression data from human breast cancer
|
Sample_geo_accession | GSM1003009
| Sample_status | Public on Sep 13 2012
| Sample_submission_date | Sep 12 2012
| Sample_last_update_date | Sep 13 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | After day 1 biopsy on endocrine therapy alone, sorafenib was added and a second biopsy was obtained on day 28.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | 3' IVT express
| Sample_hyb_protocol | Standard Affymetrix protocol for 3' IVT design
| Sample_scan_protocol | Affymetrix Genechip 7G scanner
| Sample_data_processing | GCRMA, gcrma package (version 2.28.0) in R/Bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | Suleiman,,Massarweh
| Sample_contact_email | massarweh@uky.edu
| Sample_contact_institute | University of Kentucky and Markey Cancer Center
| Sample_contact_address | 800 Rose St., Cc452
| Sample_contact_city | Lexington
| Sample_contact_state | KY
| Sample_contact_zip/postal_code | 40536
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003009/suppl/GSM1003009_4-1_061011_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE40837
| Sample_data_row_count | 54675
| |
|
GSM1003010 | GPL570 |
|
Human breast tumor post treatment, biological rep3
|
Human breast tumor, post sorafenib treatment
|
tissue: breast tumor
age: 45
er status: Positive
pgr status: Positive
endocrine agent: Tamoxifen
status on endocrine agent: N/A
response to sorafenib: Progressive disease (PD)
|
Gene expression data from human breast cancer
|
Sample_geo_accession | GSM1003010
| Sample_status | Public on Sep 13 2012
| Sample_submission_date | Sep 12 2012
| Sample_last_update_date | Sep 13 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | After day 1 biopsy on endocrine therapy alone, sorafenib was added and a second biopsy was obtained on day 28.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | 3' IVT express
| Sample_hyb_protocol | Standard Affymetrix protocol for 3' IVT design
| Sample_scan_protocol | Affymetrix Genechip 7G scanner
| Sample_data_processing | GCRMA, gcrma package (version 2.28.0) in R/Bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | Suleiman,,Massarweh
| Sample_contact_email | massarweh@uky.edu
| Sample_contact_institute | University of Kentucky and Markey Cancer Center
| Sample_contact_address | 800 Rose St., Cc452
| Sample_contact_city | Lexington
| Sample_contact_state | KY
| Sample_contact_zip/postal_code | 40536
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003010/suppl/GSM1003010_4-2_061011_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE40837
| Sample_data_row_count | 54675
| |
|
GSM1003011 | GPL570 |
|
Human breast tumor pre treatment, biological rep4
|
Human breast tumor, pre sorafenib treatment
|
tissue: breast tumor
age: 63
er status: Positive
pgr status: Negative
endocrine agent: Letrozole
status on endocrine agent: Progressive disease (PD)
response to sorafenib: N/A
|
Gene expression data from human breast cancer
|
Sample_geo_accession | GSM1003011
| Sample_status | Public on Sep 13 2012
| Sample_submission_date | Sep 12 2012
| Sample_last_update_date | Sep 13 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | After day 1 biopsy on endocrine therapy alone, sorafenib was added and a second biopsy was obtained on day 28.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | 3' IVT express
| Sample_hyb_protocol | Standard Affymetrix protocol for 3' IVT design
| Sample_scan_protocol | Affymetrix Genechip 7G scanner
| Sample_data_processing | GCRMA, gcrma package (version 2.28.0) in R/Bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | Suleiman,,Massarweh
| Sample_contact_email | massarweh@uky.edu
| Sample_contact_institute | University of Kentucky and Markey Cancer Center
| Sample_contact_address | 800 Rose St., Cc452
| Sample_contact_city | Lexington
| Sample_contact_state | KY
| Sample_contact_zip/postal_code | 40536
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003011/suppl/GSM1003011_5-1_061011_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE40837
| Sample_data_row_count | 54675
| |
|
GSM1003012 | GPL570 |
|
Human breast tumor post treatment, biological rep4
|
Human breast tumor, post sorafenib treatment
|
tissue: breast tumor
age: 63
er status: Positive
pgr status: Negative
endocrine agent: Letrozole
status on endocrine agent: N/A
response to sorafenib: Stable disease (SD)
|
Gene expression data from human breast cancer
|
Sample_geo_accession | GSM1003012
| Sample_status | Public on Sep 13 2012
| Sample_submission_date | Sep 12 2012
| Sample_last_update_date | Sep 13 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | After day 1 biopsy on endocrine therapy alone, sorafenib was added and a second biopsy was obtained on day 28.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | 3' IVT express
| Sample_hyb_protocol | Standard Affymetrix protocol for 3' IVT design
| Sample_scan_protocol | Affymetrix Genechip 7G scanner
| Sample_data_processing | GCRMA, gcrma package (version 2.28.0) in R/Bioconductor
| Sample_platform_id | GPL570
| Sample_contact_name | Suleiman,,Massarweh
| Sample_contact_email | massarweh@uky.edu
| Sample_contact_institute | University of Kentucky and Markey Cancer Center
| Sample_contact_address | 800 Rose St., Cc452
| Sample_contact_city | Lexington
| Sample_contact_state | KY
| Sample_contact_zip/postal_code | 40536
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003012/suppl/GSM1003012_5-2_061011_HG-U133_Plus_2_.CEL.gz
| Sample_series_id | GSE40837
| Sample_data_row_count | 54675
| |
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