Search results for the GEO ID: GSE40856 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1003379 | GPL1261 |
|
Nontumor_Control1
|
small intestinal mucosa
|
tissue: small intestinal mucosa
strain: C57BL/6
genotype: Apc (Min/+)/Spint1 (flox/flox)
hai-1 expression: expressed
tissue type: non-tumor
|
Gene expression data from non-tumor intestinal mucosa tissue of control Apc(Min/+) mice
|
Sample_geo_accession | GSM1003379
| Sample_status | Public on Apr 01 2013
| Sample_submission_date | Sep 13 2012
| Sample_last_update_date | Apr 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice with intestinal epithelial cell-specific deletion of the Spint1 gene (Spint1flox/flox/Vil-Cre) were generated by interbreeding mice carrying Spint1/LoxP homozygous alleles (Spint1flox/flox) with Cre transgenic mice under the control of the intestine-specific villin promoter. ApcMin/+ mice were then interbred with Spint1flox/flox/Vil-Cre mice, generating ApcMin/+ mice with intestine-specific deletion of the Spint1 gene (ApcMin/+/Spint1flox/flox/Vil-Cre).
| Sample_growth_protocol_ch1 | All mice were housed in a pathogen-free barrier environment for the duration of the study. All mice had a C57BL/6 genetic background and were fed a semipurified AIN-76 diet under specific pathogen-free condition.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted with Trizol reagent and PureLink RNA Micro Kit (Invitrogen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using One-cycle target labeling kit according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Affymetrix standard procedure for Mouse Genome 430 2.0 array
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 (Affymetrix)
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method (RMA normalization and log2 transformation). The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tsuyoshi,,Fukushima
| Sample_contact_email | fukuchan@med.miyazaki-u.ac.jp
| Sample_contact_phone | 81 985 852809
| Sample_contact_fax | 81 985 856003
| Sample_contact_laboratory | Oncopathology and Regenerative Biology
| Sample_contact_department | Pathology
| Sample_contact_institute | University of Miyazaki
| Sample_contact_address | 5200 Kihara, Kiyotake
| Sample_contact_city | Miyazaki
| Sample_contact_zip/postal_code | 889-1692
| Sample_contact_country | Japan
| Sample_contact_web_link | http://www.med.miyazaki-u.ac.jp/patho2/englishpage/index.html
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003379/suppl/GSM1003379_NC1cel.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003379/suppl/GSM1003379_NC1chp.CHP.gz
| Sample_series_id | GSE40856
| Sample_data_row_count | 45101
| |
|
GSM1003380 | GPL1261 |
|
Nontumor_Control2
|
small intestinal mucosa
|
tissue: small intestinal mucosa
strain: C57BL/6
genotype: Apc (Min/+)/Spint1 (flox/flox)
hai-1 expression: expressed
tissue type: non-tumor
|
Gene expression data from non-tumor intestinal mucosa tissue of control Apc(Min/+) mice
|
Sample_geo_accession | GSM1003380
| Sample_status | Public on Apr 01 2013
| Sample_submission_date | Sep 13 2012
| Sample_last_update_date | Apr 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice with intestinal epithelial cell-specific deletion of the Spint1 gene (Spint1flox/flox/Vil-Cre) were generated by interbreeding mice carrying Spint1/LoxP homozygous alleles (Spint1flox/flox) with Cre transgenic mice under the control of the intestine-specific villin promoter. ApcMin/+ mice were then interbred with Spint1flox/flox/Vil-Cre mice, generating ApcMin/+ mice with intestine-specific deletion of the Spint1 gene (ApcMin/+/Spint1flox/flox/Vil-Cre).
| Sample_growth_protocol_ch1 | All mice were housed in a pathogen-free barrier environment for the duration of the study. All mice had a C57BL/6 genetic background and were fed a semipurified AIN-76 diet under specific pathogen-free condition.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted with Trizol reagent and PureLink RNA Micro Kit (Invitrogen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using One-cycle target labeling kit according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Affymetrix standard procedure for Mouse Genome 430 2.0 array
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 (Affymetrix)
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method (RMA normalization and log2 transformation). The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tsuyoshi,,Fukushima
| Sample_contact_email | fukuchan@med.miyazaki-u.ac.jp
| Sample_contact_phone | 81 985 852809
| Sample_contact_fax | 81 985 856003
| Sample_contact_laboratory | Oncopathology and Regenerative Biology
| Sample_contact_department | Pathology
| Sample_contact_institute | University of Miyazaki
| Sample_contact_address | 5200 Kihara, Kiyotake
| Sample_contact_city | Miyazaki
| Sample_contact_zip/postal_code | 889-1692
| Sample_contact_country | Japan
| Sample_contact_web_link | http://www.med.miyazaki-u.ac.jp/patho2/englishpage/index.html
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003380/suppl/GSM1003380_NC2cel.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003380/suppl/GSM1003380_NC2chp.CHP.gz
| Sample_series_id | GSE40856
| Sample_data_row_count | 45101
| |
|
GSM1003381 | GPL1261 |
|
Tumor_Control1
|
tumor of the small intestine
|
tissue: tumor of the small intestine
strain: C57BL/6
genotype: Apc (Min/+)/Spint1 (flox/flox)
hai-1 expression: expressed
tissue type: tumor
|
Gene expression data from intestinal tumor of control Apc(Min/+) mice
|
Sample_geo_accession | GSM1003381
| Sample_status | Public on Apr 01 2013
| Sample_submission_date | Sep 13 2012
| Sample_last_update_date | Apr 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice with intestinal epithelial cell-specific deletion of the Spint1 gene (Spint1flox/flox/Vil-Cre) were generated by interbreeding mice carrying Spint1/LoxP homozygous alleles (Spint1flox/flox) with Cre transgenic mice under the control of the intestine-specific villin promoter. ApcMin/+ mice were then interbred with Spint1flox/flox/Vil-Cre mice, generating ApcMin/+ mice with intestine-specific deletion of the Spint1 gene (ApcMin/+/Spint1flox/flox/Vil-Cre).
| Sample_growth_protocol_ch1 | All mice were housed in a pathogen-free barrier environment for the duration of the study. All mice had a C57BL/6 genetic background and were fed a semipurified AIN-76 diet under specific pathogen-free condition.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted with Trizol reagent and PureLink RNA Micro Kit (Invitrogen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using One-cycle target labeling kit according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Affymetrix standard procedure for Mouse Genome 430 2.0 array
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 (Affymetrix)
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method (RMA normalization and log2 transformation). The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tsuyoshi,,Fukushima
| Sample_contact_email | fukuchan@med.miyazaki-u.ac.jp
| Sample_contact_phone | 81 985 852809
| Sample_contact_fax | 81 985 856003
| Sample_contact_laboratory | Oncopathology and Regenerative Biology
| Sample_contact_department | Pathology
| Sample_contact_institute | University of Miyazaki
| Sample_contact_address | 5200 Kihara, Kiyotake
| Sample_contact_city | Miyazaki
| Sample_contact_zip/postal_code | 889-1692
| Sample_contact_country | Japan
| Sample_contact_web_link | http://www.med.miyazaki-u.ac.jp/patho2/englishpage/index.html
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003381/suppl/GSM1003381_TC1cel.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003381/suppl/GSM1003381_TC1chp.CHP.gz
| Sample_series_id | GSE40856
| Sample_data_row_count | 45101
| |
|
GSM1003382 | GPL1261 |
|
Tumor_Control2
|
tumor of the small intestine
|
tissue: tumor of the small intestine
strain: C57BL/6
genotype: Apc (Min/+)/Spint1 (flox/flox)
hai-1 expression: expressed
tissue type: tumor
|
Gene expression data from intestinal tumor of control Apc(Min/+) mice
|
Sample_geo_accession | GSM1003382
| Sample_status | Public on Apr 01 2013
| Sample_submission_date | Sep 13 2012
| Sample_last_update_date | Apr 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice with intestinal epithelial cell-specific deletion of the Spint1 gene (Spint1flox/flox/Vil-Cre) were generated by interbreeding mice carrying Spint1/LoxP homozygous alleles (Spint1flox/flox) with Cre transgenic mice under the control of the intestine-specific villin promoter. ApcMin/+ mice were then interbred with Spint1flox/flox/Vil-Cre mice, generating ApcMin/+ mice with intestine-specific deletion of the Spint1 gene (ApcMin/+/Spint1flox/flox/Vil-Cre).
| Sample_growth_protocol_ch1 | All mice were housed in a pathogen-free barrier environment for the duration of the study. All mice had a C57BL/6 genetic background and were fed a semipurified AIN-76 diet under specific pathogen-free condition.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted with Trizol reagent and PureLink RNA Micro Kit (Invitrogen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using One-cycle target labeling kit according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Affymetrix standard procedure for Mouse Genome 430 2.0 array
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 (Affymetrix)
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method (RMA normalization and log2 transformation). The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tsuyoshi,,Fukushima
| Sample_contact_email | fukuchan@med.miyazaki-u.ac.jp
| Sample_contact_phone | 81 985 852809
| Sample_contact_fax | 81 985 856003
| Sample_contact_laboratory | Oncopathology and Regenerative Biology
| Sample_contact_department | Pathology
| Sample_contact_institute | University of Miyazaki
| Sample_contact_address | 5200 Kihara, Kiyotake
| Sample_contact_city | Miyazaki
| Sample_contact_zip/postal_code | 889-1692
| Sample_contact_country | Japan
| Sample_contact_web_link | http://www.med.miyazaki-u.ac.jp/patho2/englishpage/index.html
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003382/suppl/GSM1003382_TC2cel.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003382/suppl/GSM1003382_TC2chp.CHP.gz
| Sample_series_id | GSE40856
| Sample_data_row_count | 45101
| |
|
GSM1003383 | GPL1261 |
|
Nontumor_KO1
|
small intestinal mucosa
|
tissue: small intestinal mucosa
strain: C57BL/6
genotype: Apc (Min/+)/Spint1 (flox/flox)/Vil-Cre
hai-1 expression: intestine-specific deletion
tissue type: non-tumor
|
Gene expression data from non-tumor intestinal tumor of intestine-specific HAI-1 deficient Apc(Min/+) mice
|
Sample_geo_accession | GSM1003383
| Sample_status | Public on Apr 01 2013
| Sample_submission_date | Sep 13 2012
| Sample_last_update_date | Apr 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice with intestinal epithelial cell-specific deletion of the Spint1 gene (Spint1flox/flox/Vil-Cre) were generated by interbreeding mice carrying Spint1/LoxP homozygous alleles (Spint1flox/flox) with Cre transgenic mice under the control of the intestine-specific villin promoter. ApcMin/+ mice were then interbred with Spint1flox/flox/Vil-Cre mice, generating ApcMin/+ mice with intestine-specific deletion of the Spint1 gene (ApcMin/+/Spint1flox/flox/Vil-Cre).
| Sample_growth_protocol_ch1 | All mice were housed in a pathogen-free barrier environment for the duration of the study. All mice had a C57BL/6 genetic background and were fed a semipurified AIN-76 diet under specific pathogen-free condition.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted with Trizol reagent and PureLink RNA Micro Kit (Invitrogen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using One-cycle target labeling kit according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Affymetrix standard procedure for Mouse Genome 430 2.0 array
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 (Affymetrix)
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method (RMA normalization and log2 transformation). The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tsuyoshi,,Fukushima
| Sample_contact_email | fukuchan@med.miyazaki-u.ac.jp
| Sample_contact_phone | 81 985 852809
| Sample_contact_fax | 81 985 856003
| Sample_contact_laboratory | Oncopathology and Regenerative Biology
| Sample_contact_department | Pathology
| Sample_contact_institute | University of Miyazaki
| Sample_contact_address | 5200 Kihara, Kiyotake
| Sample_contact_city | Miyazaki
| Sample_contact_zip/postal_code | 889-1692
| Sample_contact_country | Japan
| Sample_contact_web_link | http://www.med.miyazaki-u.ac.jp/patho2/englishpage/index.html
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003383/suppl/GSM1003383_NKO1cel.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003383/suppl/GSM1003383_NKO1chp.CHP.gz
| Sample_series_id | GSE40856
| Sample_data_row_count | 45101
| |
|
GSM1003384 | GPL1261 |
|
Nontumor_KO2
|
small intestinal mucosa
|
tissue: small intestinal mucosa
strain: C57BL/6
genotype: Apc (Min/+)/Spint1 (flox/flox)/Vil-Cre
hai-1 expression: intestine-specific deletion
tissue type: non-tumor
|
Gene expression data from non-tumor intestinal tumor of intestine-specific HAI-1 deficient Apc(Min/+) mice
|
Sample_geo_accession | GSM1003384
| Sample_status | Public on Apr 01 2013
| Sample_submission_date | Sep 13 2012
| Sample_last_update_date | Apr 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice with intestinal epithelial cell-specific deletion of the Spint1 gene (Spint1flox/flox/Vil-Cre) were generated by interbreeding mice carrying Spint1/LoxP homozygous alleles (Spint1flox/flox) with Cre transgenic mice under the control of the intestine-specific villin promoter. ApcMin/+ mice were then interbred with Spint1flox/flox/Vil-Cre mice, generating ApcMin/+ mice with intestine-specific deletion of the Spint1 gene (ApcMin/+/Spint1flox/flox/Vil-Cre).
| Sample_growth_protocol_ch1 | All mice were housed in a pathogen-free barrier environment for the duration of the study. All mice had a C57BL/6 genetic background and were fed a semipurified AIN-76 diet under specific pathogen-free condition.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted with Trizol reagent and PureLink RNA Micro Kit (Invitrogen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using One-cycle target labeling kit according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Affymetrix standard procedure for Mouse Genome 430 2.0 array
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 (Affymetrix)
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method (RMA normalization and log2 transformation). The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tsuyoshi,,Fukushima
| Sample_contact_email | fukuchan@med.miyazaki-u.ac.jp
| Sample_contact_phone | 81 985 852809
| Sample_contact_fax | 81 985 856003
| Sample_contact_laboratory | Oncopathology and Regenerative Biology
| Sample_contact_department | Pathology
| Sample_contact_institute | University of Miyazaki
| Sample_contact_address | 5200 Kihara, Kiyotake
| Sample_contact_city | Miyazaki
| Sample_contact_zip/postal_code | 889-1692
| Sample_contact_country | Japan
| Sample_contact_web_link | http://www.med.miyazaki-u.ac.jp/patho2/englishpage/index.html
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003384/suppl/GSM1003384_NKO2cel.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003384/suppl/GSM1003384_NKO2chp.CHP.gz
| Sample_series_id | GSE40856
| Sample_data_row_count | 45101
| |
|
GSM1003385 | GPL1261 |
|
Tumor_KO1
|
tumor of the small intestine
|
tissue: tumor of the small intestine
strain: C57BL/6
genotype: Apc (Min/+)/Spint1 (flox/flox)/Vil-Cre
hai-1 expression: intestine-specific deletion
tissue type: tumor
|
Gene expression data from intestinal tumor of intestine-specific HAI-1 deficient Apc(Min/+) mice
|
Sample_geo_accession | GSM1003385
| Sample_status | Public on Apr 01 2013
| Sample_submission_date | Sep 13 2012
| Sample_last_update_date | Apr 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice with intestinal epithelial cell-specific deletion of the Spint1 gene (Spint1flox/flox/Vil-Cre) were generated by interbreeding mice carrying Spint1/LoxP homozygous alleles (Spint1flox/flox) with Cre transgenic mice under the control of the intestine-specific villin promoter. ApcMin/+ mice were then interbred with Spint1flox/flox/Vil-Cre mice, generating ApcMin/+ mice with intestine-specific deletion of the Spint1 gene (ApcMin/+/Spint1flox/flox/Vil-Cre).
| Sample_growth_protocol_ch1 | All mice were housed in a pathogen-free barrier environment for the duration of the study. All mice had a C57BL/6 genetic background and were fed a semipurified AIN-76 diet under specific pathogen-free condition.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted with Trizol reagent and PureLink RNA Micro Kit (Invitrogen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using One-cycle target labeling kit according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Affymetrix standard procedure for Mouse Genome 430 2.0 array
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 (Affymetrix)
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method (RMA normalization and log2 transformation). The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tsuyoshi,,Fukushima
| Sample_contact_email | fukuchan@med.miyazaki-u.ac.jp
| Sample_contact_phone | 81 985 852809
| Sample_contact_fax | 81 985 856003
| Sample_contact_laboratory | Oncopathology and Regenerative Biology
| Sample_contact_department | Pathology
| Sample_contact_institute | University of Miyazaki
| Sample_contact_address | 5200 Kihara, Kiyotake
| Sample_contact_city | Miyazaki
| Sample_contact_zip/postal_code | 889-1692
| Sample_contact_country | Japan
| Sample_contact_web_link | http://www.med.miyazaki-u.ac.jp/patho2/englishpage/index.html
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003385/suppl/GSM1003385_TKO1cel.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003385/suppl/GSM1003385_TKO1chp.CHP.gz
| Sample_series_id | GSE40856
| Sample_data_row_count | 45101
| |
|
GSM1003386 | GPL1261 |
|
Tumor_KO2
|
tumor of the small intestine
|
tissue: tumor of the small intestine
strain: C57BL/6
genotype: Apc (Min/+)/Spint1 (flox/flox)/Vil-Cre
hai-1 expression: intestine-specific deletion
tissue type: tumor
|
Gene expression data from intestinal tumor of intestine-specific HAI-1 deficient Apc(Min/+) mice
|
Sample_geo_accession | GSM1003386
| Sample_status | Public on Apr 01 2013
| Sample_submission_date | Sep 13 2012
| Sample_last_update_date | Apr 01 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Mice with intestinal epithelial cell-specific deletion of the Spint1 gene (Spint1flox/flox/Vil-Cre) were generated by interbreeding mice carrying Spint1/LoxP homozygous alleles (Spint1flox/flox) with Cre transgenic mice under the control of the intestine-specific villin promoter. ApcMin/+ mice were then interbred with Spint1flox/flox/Vil-Cre mice, generating ApcMin/+ mice with intestine-specific deletion of the Spint1 gene (ApcMin/+/Spint1flox/flox/Vil-Cre).
| Sample_growth_protocol_ch1 | All mice were housed in a pathogen-free barrier environment for the duration of the study. All mice had a C57BL/6 genetic background and were fed a semipurified AIN-76 diet under specific pathogen-free condition.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNAs were extracted with Trizol reagent and PureLink RNA Micro Kit (Invitrogen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared using One-cycle target labeling kit according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Affymetrix standard procedure for Mouse Genome 430 2.0 array
| Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 (Affymetrix)
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method (RMA normalization and log2 transformation). The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Tsuyoshi,,Fukushima
| Sample_contact_email | fukuchan@med.miyazaki-u.ac.jp
| Sample_contact_phone | 81 985 852809
| Sample_contact_fax | 81 985 856003
| Sample_contact_laboratory | Oncopathology and Regenerative Biology
| Sample_contact_department | Pathology
| Sample_contact_institute | University of Miyazaki
| Sample_contact_address | 5200 Kihara, Kiyotake
| Sample_contact_city | Miyazaki
| Sample_contact_zip/postal_code | 889-1692
| Sample_contact_country | Japan
| Sample_contact_web_link | http://www.med.miyazaki-u.ac.jp/patho2/englishpage/index.html
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003386/suppl/GSM1003386_TKO2cel.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1003nnn/GSM1003386/suppl/GSM1003386_TKO2chp.CHP.gz
| Sample_series_id | GSE40856
| Sample_data_row_count | 45101
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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