Search results for the GEO ID: GSE41194 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1010264 | GPL8300 |
|
DCIS0011
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010264
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010264/suppl/GSM1010264_DCIS0011.U95Av2.AB1.011502.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010265 | GPL8300 |
|
DCIS0062
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010265
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010265/suppl/GSM1010265_DCIS0062.U95Av2.AB1.011502.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010266 | GPL8300 |
|
DCIS0068
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010266
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010266/suppl/GSM1010266_DCIS0068.U95Av2.AB1.011802.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010267 | GPL8300 |
|
DCIS1528
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010267
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010267/suppl/GSM1010267_DCIS1528.U95Av2.AB1.010302.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010268 | GPL8300 |
|
DCIS2897
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010268
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010268/suppl/GSM1010268_DCIS2897.U95Av2.AB1.032602.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010269 | GPL8300 |
|
DCIS2921
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010269
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010269/suppl/GSM1010269_DCIS2921.U95Av2.AB1.032602.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010270 | GPL8300 |
|
DCIS3102
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010270
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010270/suppl/GSM1010270_DCIS3102.U95Av2.AB1.030602.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010271 | GPL8300 |
|
DCIS3340
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010271
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010271/suppl/GSM1010271_DCIS3340.U95Av2.AB1.031902.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010272 | GPL8300 |
|
DCIS3443
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010272
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010272/suppl/GSM1010272_DCIS3443.U95Av2.AB1.011802.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010273 | GPL8300 |
|
DCIS3495
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010273
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010273/suppl/GSM1010273_DCIS3495.U95Av2.AB1.031902.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010274 | GPL8300 |
|
DCIS3627
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010274
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010274/suppl/GSM1010274_DCIS3627.U95Av2.AB1.011802.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010275 | GPL8300 |
|
DCIS3630
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010275
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010275/suppl/GSM1010275_DCIS3630.U95Av2.AB1.010302.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010276 | GPL8300 |
|
DCIS3794
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010276
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010276/suppl/GSM1010276_DCIS3794.U95Av2.AB1.031302.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010277 | GPL8300 |
|
DCIS4160
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010277
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010277/suppl/GSM1010277_DCIS4160.U95A.AB1.120501.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010278 | GPL8300 |
|
DCIS4339
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010278
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010278/suppl/GSM1010278_DCIS4339.U95Av2.AB1.121101.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010279 | GPL8300 |
|
DCIS4899
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010279
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010279/suppl/GSM1010279_DCIS4899.U95Av2.AB1.121101.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010280 | GPL8300 |
|
DCIS50020
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010280
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010280/suppl/GSM1010280_DCIS50020.U95Av2.AB1.031902.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010281 | GPL8300 |
|
DCIS50021
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010281
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010281/suppl/GSM1010281_DCIS50021.U95Av2.AB1.022702.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010282 | GPL8300 |
|
DCIS50023
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010282
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010282/suppl/GSM1010282_DCIS50023.U95A.AB1.120501.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010283 | GPL8300 |
|
DCIS50024
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010283
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010283/suppl/GSM1010283_DCIS50024.U95A.AB1.112001.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010284 | GPL8300 |
|
DCIS50025
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010284
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010284/suppl/GSM1010284_DCIS50025.U95A.AB1.110701.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010285 | GPL8300 |
|
DCIS50026
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010285
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010285/suppl/GSM1010285_DCIS50026.U95Av2.AB1.030602.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010286 | GPL8300 |
|
DCIS50027
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010286
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010286/suppl/GSM1010286_DCIS50027.U95A.AB1.102501.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010287 | GPL8300 |
|
DCIS50028
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010287
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010287/suppl/GSM1010287_DCIS50028.U95Av2.AB1.030602.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010288 | GPL8300 |
|
DCIS50029
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010288
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010288/suppl/GSM1010288_DCIS50029.U95A.AB1.112001.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010289 | GPL8300 |
|
DCIS50032
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010289
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010289/suppl/GSM1010289_DCIS50032.U95Av2.AB1.031302.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010290 | GPL8300 |
|
IBC0700
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010290
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010290/suppl/GSM1010290_IBC0700.U95Av2.AB1.121101.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010291 | GPL8300 |
|
IBC0914
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010291
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010291/suppl/GSM1010291_IBC0914.U95Av2.AB1.012502.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010292 | GPL8300 |
|
IBC1121
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010292
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010292/suppl/GSM1010292_IBC1121.U95Av2.AB1.011502.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010293 | GPL8300 |
|
IBC1142
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010293
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010293/suppl/GSM1010293_IBC1142.U95Av2.AB1.011502.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010294 | GPL8300 |
|
IBC1179
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010294
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010294/suppl/GSM1010294_IBC1179.U95Av2.AB1.011802.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010295 | GPL8300 |
|
IBC1250
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010295
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010295/suppl/GSM1010295_IBC1250.U95Av2.AB1.010302.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010296 | GPL8300 |
|
IBC1267
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010296
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010296/suppl/GSM1010296_IBC1267.U95A.AB1.120501.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010297 | GPL8300 |
|
IBC1286
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010297
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010297/suppl/GSM1010297_IBC1286.U95Av2.AB1.011802.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010298 | GPL8300 |
|
IBC1428
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010298
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010298/suppl/GSM1010298_IBC1428.U95Av2.AB1.011502.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010299 | GPL8300 |
|
IBC1862
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010299
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010299/suppl/GSM1010299_IBC1862.U95Av2.AB1.012502.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010300 | GPL8300 |
|
IBC2012
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010300
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010300/suppl/GSM1010300_IBC2012.U95Av2.AB1.022702.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010301 | GPL8300 |
|
IBC2051
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010301
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010301/suppl/GSM1010301_IBC2051.U95Av2.AB1.022202.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010302 | GPL8300 |
|
IBC2055
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010302
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010302/suppl/GSM1010302_IBC2055.U95Av2.AB1.022702.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010303 | GPL8300 |
|
IBC2128
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010303
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010303/suppl/GSM1010303_IBC2128.U95Av2.AB1.030602.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010304 | GPL8300 |
|
IBC2227
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010304
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010304/suppl/GSM1010304_IBC2227.U95Av2.AB1.031302.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010305 | GPL8300 |
|
IBC2240
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010305
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010305/suppl/GSM1010305_IBC2240.U95Av2.AB1.031902.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010306 | GPL8300 |
|
IBC2307
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010306
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010306/suppl/GSM1010306_IBC2307.U95Av2.AB1.031302.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010307 | GPL8300 |
|
IBC3098
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010307
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010307/suppl/GSM1010307_IBC3098.U95A.AB1.110701.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010308 | GPL8300 |
|
IBC3424
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010308
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010308/suppl/GSM1010308_IBC3424.U95A.AB1.120501.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010309 | GPL8300 |
|
IBC3463
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010309
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010309/suppl/GSM1010309_IBC3463.U95Av2.AB1.012502.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010310 | GPL8300 |
|
IBC3528
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010310
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010310/suppl/GSM1010310_IBC3528.U95A.AB1.102501.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010311 | GPL8300 |
|
IBC4204
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010311
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010311/suppl/GSM1010311_IBC4204.U95Av2.AB1.011802.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010312 | GPL8300 |
|
IBC4681
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010312
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010312/suppl/GSM1010312_IBC4681.U95Av2.AB1.010302.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010313 | GPL8300 |
|
IBC4699
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010313
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | manual (macro) dissection of tumor epithelium to estimated >75% total cells using Ambion kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010313/suppl/GSM1010313_IBC4699.U95A.AB1.112001.CEL.gz
| Sample_series_id | GSE41194
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
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