Search results for the GEO ID: GSE41197 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1010328 | GPL8300 |
|
DCIS.00126
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010328
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010328/suppl/GSM1010328_DCIS.00126.U95Av2.AB1.FROZ.LCM.EPI.050903.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010329 | GPL8300 |
|
DCIS.00192
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010329
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010329/suppl/GSM1010329_DCIS.00192.U95Av2.AB1.FROZ.LCM.EPI.042303.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010330 | GPL8300 |
|
DCIS.00333
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010330
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010330/suppl/GSM1010330_DCIS.00333.U95Av2.AB1.FROZ.LCM.EPI.050903.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010331 | GPL8300 |
|
DCIS.00425
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010331
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010331/suppl/GSM1010331_DCIS.00425.U95Av2.AB1.FROZ.LCM.EPI.021303.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010332 | GPL8300 |
|
DCIS.01745
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010332
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010332/suppl/GSM1010332_DCIS.01745.U95Av2.AB1.FROZ.LCM.EPI.010703.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010333 | GPL8300 |
|
DCIS.03412
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010333
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010333/suppl/GSM1010333_DCIS.03412.U95Av2.AB1.FROZ.LCM.EPI.042303.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010334 | GPL8300 |
|
DCIS.03531
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010334
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010334/suppl/GSM1010334_DCIS.03531.U95Av2.AB1.FROZ.LCM.EPI.103003.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010335 | GPL8300 |
|
DCIS.04031
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010335
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010335/suppl/GSM1010335_DCIS.04031.U95Av2.AB1.FROZ.LCM.EPI.012803.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010336 | GPL8300 |
|
DCIS.05324
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
Sample_geo_accession | GSM1010336
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010336/suppl/GSM1010336_DCIS.05324.U95Av2.AB1.FROZ.LCM.EPI.032603.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010337 | GPL8300 |
|
IBC.00126
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010337
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010337/suppl/GSM1010337_IBC.00126.U95Av2.AB1.FROZ.LCM.EPI.050903.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010338 | GPL8300 |
|
IBC.00192
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010338
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010338/suppl/GSM1010338_IBC.00192.U95Av2.AB1.FROZ.LCM.EPI.042303.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010339 | GPL8300 |
|
IBC.00333
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010339
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010339/suppl/GSM1010339_IBC.00333.U95Av2.AB1.FROZ.LCM.EPI.050903.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010340 | GPL8300 |
|
IBC.00425
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010340
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010340/suppl/GSM1010340_IBC.00425.U95Av2.AB1.FROZ.LCM.EPI.021303.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010341 | GPL8300 |
|
IBC.01745
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010341
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010341/suppl/GSM1010341_IBC.01745.U95Av2.AB1.FROZ.LCM.EPI.010703.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010342 | GPL8300 |
|
IBC.03412
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010342
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010342/suppl/GSM1010342_IBC.03412.U95Av2.AB1.FROZ.LCM.EPI.042303.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010343 | GPL8300 |
|
IBC.03531
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010343
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010343/suppl/GSM1010343_IBC.03531.U95Av2.AB1.FROZ.LCM.EPI.103003.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010344 | GPL8300 |
|
IBC.04031
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010344
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010344/suppl/GSM1010344_IBC.04031.U95Av2.AB1.FROZ.LCM.EPI.012803.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
GSM1010345 | GPL8300 |
|
IBC.05324
|
Frozen Breast Biopsy
|
tissue: Breast
disease state: invasive breast cancer
|
Gene expression data from IBC
|
Sample_geo_accession | GSM1010345
| Sample_status | Public on Sep 29 2012
| Sample_submission_date | Sep 27 2012
| Sample_last_update_date | Sep 29 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_growth_protocol_ch1 | Paired DCIS and IBC samples from same patients
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | laser capture microdissection of target cells to estimated >95% total cells using Ambion RNA extraction kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| Sample_data_processing | The data were analyzed with dChip software
| Sample_platform_id | GPL8300
| Sample_contact_name | Sangjun,,Lee
| Sample_contact_email | sangjun_lee@yahoo.com
| Sample_contact_phone | 314-454-5119
| Sample_contact_fax | 314-454-5505
| Sample_contact_laboratory | Dr. Allred
| Sample_contact_department | Pathology
| Sample_contact_institute | Washington University at St. Louis
| Sample_contact_address | 4940 Parkview Place
| Sample_contact_city | St Louis
| Sample_contact_state | MO
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010345/suppl/GSM1010345_IBC.05324.U95Av2.AB1.FROZ.LCM.EPI.032603.CEL.gz
| Sample_series_id | GSE41197
| Sample_series_id | GSE41228
| Sample_data_row_count | 12558
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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