Search results for the GEO ID: GSE41198  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1010346 | GPL1352 |
|
DCIS.S04-10386-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010346
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010346/suppl/GSM1010346_DCIS.S04-10386.Stroma.X3P.AB1.031005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010347 | GPL1352 |
|
DCIS.S04-16479-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010347
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010347/suppl/GSM1010347_DCIS.S04-16479.Stroma.X3P.AB1.031005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010348 | GPL1352 |
|
DCIS.S04-18516-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010348
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010348/suppl/GSM1010348_DCIS.S04-18516.Stroma.X3P.AB1.063005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010349 | GPL1352 |
|
DCIS.S04-21947-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010349
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010349/suppl/GSM1010349_DCIS.S04-21947.Stroma.X3P.AB1.020405.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010350 | GPL1352 |
|
DCIS.S04-22560-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010350
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010350/suppl/GSM1010350_DCIS.S04-22560.Stroma.X3P.AB1.063005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010351 | GPL1352 |
|
DCIS.S04-22773-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010351
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010351/suppl/GSM1010351_DCIS.S04-22773.Stroma.X3P.AB1.030805.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010352 | GPL1352 |
|
DCIS.S04-26857-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010352
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010352/suppl/GSM1010352_DCIS.S04-26857.Stroma.X3P.AB1.020405.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010353 | GPL1352 |
|
DCIS.S04-27063-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010353
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010353/suppl/GSM1010353_DCIS.S04-27063.Stroma.X3P.AB1.041905.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010354 | GPL1352 |
|
DCIS.S05-05586-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010354
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010354/suppl/GSM1010354_DCIS.S05-05586.Stroma.X3P.AB1.041905.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010355 | GPL1352 |
|
DCIS.S05-13785-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010355
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010355/suppl/GSM1010355_DCIS.S05-13785.Stroma.X3P.AB1.122005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010356 | GPL1352 |
|
DCIS.S05-15103-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1010356
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010356/suppl/GSM1010356_DCIS.S05-15103.Stroma.X3P.AB1.122005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010357 | GPL1352 |
|
IBC.S04-01794-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010357
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010357/suppl/GSM1010357_IBC.S04-01794.Stroma.X3P.AB1.120605.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010358 | GPL1352 |
|
IBC.S04-12043-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010358
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010358/suppl/GSM1010358_IBC.S04-12043.Stroma.X3P.ABA1.111605.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010359 | GPL1352 |
|
IBC.S04-12996-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010359
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010359/suppl/GSM1010359_IBC.S04-12996.Stroma.X3P.AB1.111605.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010360 | GPL1352 |
|
IBC.S04-13326-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010360
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010360/suppl/GSM1010360_IBC.S04-13326.Stroma.X3P.AB1.093005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010361 | GPL1352 |
|
IBC.S04-16287-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010361
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010361/suppl/GSM1010361_IBC.S04-16287.Stroma.X3P.AB1.093005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010362 | GPL1352 |
|
IBC.S04-17093-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010362
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010362/suppl/GSM1010362_IBC.S04-17093.Stroma.X3P.AB1.071405.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010363 | GPL1352 |
|
IBC.S04-19797-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010363
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010363/suppl/GSM1010363_IBC.S04-19797.Stroma.X3P.AB1.120605.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010364 | GPL1352 |
|
IBC.S04-23734-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010364
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010364/suppl/GSM1010364_IBC.S04-23734.Stroma.X3P.AB1.090705.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010365 | GPL1352 |
|
IBC.S04-27640-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010365
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010365/suppl/GSM1010365_IBC.S04-27640.Stroma.X3P.AB1.102605.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010366 | GPL1352 |
|
IBC.S05-03468-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010366
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010366/suppl/GSM1010366_IBC.S05-03468.Stroma.X3P.AB1.090705.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1010367 | GPL1352 |
|
IBC.S05-11254-Stroma
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1010367
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 27 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1010nnn/GSM1010367/suppl/GSM1010367_IBC.S05-11254.Stroma.X3P.AB1.093005.CEL.gz
| | Sample_series_id | GSE41198
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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