Search results for the GEO ID: GSE41227  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1011097 | GPL1352 |
|
DCIS.S04-10386-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011097
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011097/suppl/GSM1011097_DCIS.S04-10386.Epithelium.X3P.AB1.031005.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011098 | GPL1352 |
|
DCIS.S04-16479-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011098
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011098/suppl/GSM1011098_DCIS.S04-16479.Epithelium.X3P.AB1.030805.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011099 | GPL1352 |
|
DCIS.S04-18516-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011099
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011099/suppl/GSM1011099_DCIS.S04-18516.Epithelium.X3P.AB1.063005.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011100 | GPL1352 |
|
DCIS.S04-21947-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011100
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011100/suppl/GSM1011100_DCIS.S04-21947.Epithelium.X3P.AB1.020405.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011101 | GPL1352 |
|
DCIS.S04-22560-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011101
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011101/suppl/GSM1011101_DCIS.S04-22560.Epithelium.X3P.AB1.063005.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011102 | GPL1352 |
|
DCIS.S04-22773-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011102
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011102/suppl/GSM1011102_DCIS.S04-22773.Epithelium.X3P.ABA1.082305.1.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011103 | GPL1352 |
|
DCIS.S04-26857-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011103
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011103/suppl/GSM1011103_DCIS.S04-26857.Epithelium.X3P.AB1.020405.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011104 | GPL1352 |
|
DCIS.S04-27063-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011104
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011104/suppl/GSM1011104_DCIS.S04-27063.Epithelium.X3P.AB1.041905.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011105 | GPL1352 |
|
DCIS.S05-05886-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011105
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011105/suppl/GSM1011105_DCIS.S05-05886.Epithelium.X3P.AB1.041905.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011106 | GPL1352 |
|
DCIS.S05-13785-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011106
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011106/suppl/GSM1011106_DCIS.S05-13785.Epithelium.X3P.AB1.122005.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011107 | GPL1352 |
|
DCIS.S05-15103-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: ductal carcinoma in situ
|
Gene expression data from DCIS
|
| Sample_geo_accession | GSM1011107
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011107/suppl/GSM1011107_DCIS.S05-15103.Epithelium.X3P.AB1.122005.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011108 | GPL1352 |
|
IBC.S04-01794-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011108
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011108/suppl/GSM1011108_IBC.S04-01794.Epithelium.X3P.AB1.120605.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011109 | GPL1352 |
|
IBC.S04-12043-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011109
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011109/suppl/GSM1011109_IBC.S04-12043.Epithelium.X3P.AB1.111605.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011110 | GPL1352 |
|
IBC.S04-12996-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011110
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011110/suppl/GSM1011110_IBC.S04-12996.Epithelium.X3P.AB1.111605.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011111 | GPL1352 |
|
IBC.S04-13326-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011111
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011111/suppl/GSM1011111_IBC.S04-13326.Epithelium.X3P.AB1.093005.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011112 | GPL1352 |
|
IBC.S04-16287-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011112
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011112/suppl/GSM1011112_IBC.S04-16287.Epithelium.X3P.AB1.093005.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011113 | GPL1352 |
|
IBC.S04-17093-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011113
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011113/suppl/GSM1011113_IBC.S04-17093.Epithelium.X3P.AB1.071405.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011114 | GPL1352 |
|
IBC.S04-19797-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011114
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011114/suppl/GSM1011114_IBC.S04-19797.Epithelium.X3P.AB1.102605.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011115 | GPL1352 |
|
IBC.S04-23734-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011115
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011115/suppl/GSM1011115_IBC.S04-23734.Epithelium.X3P.AB1.090705.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011116 | GPL1352 |
|
IBC.S04-27640-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011116
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011116/suppl/GSM1011116_IBC.S04-27640.Epithelium.X3P.AB1.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011117 | GPL1352 |
|
IBC.S05-03468-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011117
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011117/suppl/GSM1011117_IBC.S05-03468.Epithelium.X3P.AB1.090705.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
GSM1011118 | GPL1352 |
|
IBC.S05-11254-Epi
|
FFPE Breast Biopsy
|
tissue: Breast
cell type: epithelial
disease state: invasive breast cancer
|
Gene expression data from IBC
|
| Sample_geo_accession | GSM1011118
| | Sample_status | Public on Sep 29 2012
| | Sample_submission_date | Sep 28 2012
| | Sample_last_update_date | Sep 29 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | laser capture microdissection of target cells (Epithelial) to estimated >95% total cells using Ambion RNA extraction kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol using Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner
| | Sample_data_processing | The data were analyzed with dChip software
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Sangjun,,Lee
| | Sample_contact_email | sangjun_lee@yahoo.com
| | Sample_contact_phone | 314-454-5119
| | Sample_contact_fax | 314-454-5505
| | Sample_contact_laboratory | Dr. Allred
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Washington University at St. Louis
| | Sample_contact_address | 4940 Parkview Place
| | Sample_contact_city | St Louis
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 63110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1011nnn/GSM1011118/suppl/GSM1011118_IBC.S05-11254.Epithelium.X3P.AB1.093005.CEL.gz
| | Sample_series_id | GSE41227
| | Sample_series_id | GSE41228
| | Sample_data_row_count | 61297
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
