Search results for the GEO ID: GSE41260  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1012668 | GPL1261 |
|
8711-control-OF
|
E11.5 optic fissue-WT
|
age: E11.5
strain: C57BL/6J
genotype/variation: Six3Cre-;Fgfr1fx/fx;Fgfr2fx/fx (control)
tissue: optic fissure
|
gene expression profile of normal optic fissure
|
| Sample_geo_accession | GSM1012668
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Oct 01 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | embryos are collected at E11.5
| | Sample_growth_protocol_ch1 | time-mated mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Shuyi,,Chen
| | Sample_contact_email | sch@stowers.org
| | Sample_contact_institute | Stowers Institute for Medical Research
| | Sample_contact_address | 1000 E 50Th St.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 64110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012668/suppl/GSM1012668_8711-control-OF_Mouse430_2.CEL.gz
| | Sample_series_id | GSE41260
| | Sample_data_row_count | 45101
| | |
|
GSM1012669 | GPL1261 |
|
9216-control-OF
|
E11.5 optic fissue-WT
|
age: E11.5
strain: C57BL/6J
genotype/variation: Six3Cre-;Fgfr1fx/fx;Fgfr2fx/fx (control)
tissue: optic fissure
|
gene expression profile of normal optic fissure
|
| Sample_geo_accession | GSM1012669
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Oct 01 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | embryos are collected at E11.5
| | Sample_growth_protocol_ch1 | time-mated mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Shuyi,,Chen
| | Sample_contact_email | sch@stowers.org
| | Sample_contact_institute | Stowers Institute for Medical Research
| | Sample_contact_address | 1000 E 50Th St.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 64110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012669/suppl/GSM1012669_9216-control-OF_Mouse430_2.CEL.gz
| | Sample_series_id | GSE41260
| | Sample_data_row_count | 45101
| | |
|
GSM1012670 | GPL1261 |
|
9266-control-OF
|
E11.5 optic fissue-WT
|
age: E11.5
strain: C57BL/6J
genotype/variation: Six3Cre-;Fgfr1fx/fx;Fgfr2fx/fx (control)
tissue: optic fissure
|
gene expression profile of normal optic fissure
|
| Sample_geo_accession | GSM1012670
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Oct 01 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | embryos are collected at E11.5
| | Sample_growth_protocol_ch1 | time-mated mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Shuyi,,Chen
| | Sample_contact_email | sch@stowers.org
| | Sample_contact_institute | Stowers Institute for Medical Research
| | Sample_contact_address | 1000 E 50Th St.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 64110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012670/suppl/GSM1012670_9266-control-OF_Mouse430_2.CEL.gz
| | Sample_series_id | GSE41260
| | Sample_data_row_count | 45101
| | |
|
GSM1012671 | GPL1261 |
|
8711-mutant-OF
|
E11.5 optic fissue-FGFR mutant
|
age: E11.5
strain: C57BL/6J
genotype/variation: Six3Cre+;Fgfr1fx/fx;Fgfr2fx/fx (FGFR mutant)
tissue: optic fissure
|
gene expression profile of FGFR mutant optic fissure
|
| Sample_geo_accession | GSM1012671
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Oct 01 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | embryos are collected at E11.5
| | Sample_growth_protocol_ch1 | time-mated mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Shuyi,,Chen
| | Sample_contact_email | sch@stowers.org
| | Sample_contact_institute | Stowers Institute for Medical Research
| | Sample_contact_address | 1000 E 50Th St.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 64110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012671/suppl/GSM1012671_8711-mutant-OF_Mouse430_2.CEL.gz
| | Sample_series_id | GSE41260
| | Sample_data_row_count | 45101
| | |
|
GSM1012672 | GPL1261 |
|
9216-mutant-OF
|
E11.5 optic fissue-FGFR mutant
|
age: E11.5
strain: C57BL/6J
genotype/variation: Six3Cre+;Fgfr1fx/fx;Fgfr2fx/fx (FGFR mutant)
tissue: optic fissure
|
gene expression profile of FGFR mutant optic fissure
|
| Sample_geo_accession | GSM1012672
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Oct 01 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | embryos are collected at E11.5
| | Sample_growth_protocol_ch1 | time-mated mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Shuyi,,Chen
| | Sample_contact_email | sch@stowers.org
| | Sample_contact_institute | Stowers Institute for Medical Research
| | Sample_contact_address | 1000 E 50Th St.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 64110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012672/suppl/GSM1012672_9216-mutant-OF_Mouse430_2.CEL.gz
| | Sample_series_id | GSE41260
| | Sample_data_row_count | 45101
| | |
|
GSM1012673 | GPL1261 |
|
9266-mutant-OF
|
E11.5 optic fissue-FGFR mutant
|
age: E11.5
strain: C57BL/6J
genotype/variation: Six3Cre+;Fgfr1fx/fx;Fgfr2fx/fx (FGFR mutant)
tissue: optic fissure
|
gene expression profile of FGFR mutant optic fissure
|
| Sample_geo_accession | GSM1012673
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Oct 01 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | embryos are collected at E11.5
| | Sample_growth_protocol_ch1 | time-mated mice
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Shuyi,,Chen
| | Sample_contact_email | sch@stowers.org
| | Sample_contact_institute | Stowers Institute for Medical Research
| | Sample_contact_address | 1000 E 50Th St.
| | Sample_contact_city | Kansas City
| | Sample_contact_state | MO
| | Sample_contact_zip/postal_code | 64110
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1012nnn/GSM1012673/suppl/GSM1012673_9266-mutant-OF_Mouse430_2.CEL.gz
| | Sample_series_id | GSE41260
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
